Sequence
atgc intronic sequence ATGC exonic sequencegtttggtgtttcttccttttgcttgtttctcatctttttagctctgtttcagtgagagattgttgttgttgttgggttgttatcagTGGCTGCTTTGATGTCCATGAAGAGTAAGACGAATGATGAGTTCCATGTCCATGTCATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGGA
Basic information
species | Glycine max |
transcript | GLYMA15G09100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G09100.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G45780.1 (Arabidopsis thaliana), 3'ss of exon 1
gtttggtgtttcttccttttgcttgtttctcatctttttagctctgtttcagtgagagattgttgttgttgttgggttgttatcagTGGCTGCTTTGATGTCCATGAAGAGTAAGACGAATGATGAGTTCCATGTCCATGTCATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGGA------
|| | | | | | | || | | || |||| || | | | || ||||||| || | ||||||||| || ||||| |||||| |||| ||| |||||| | || |||| ||||||||||||||| || ||||| |||||||||||| |
--gtgaaaaaagtatcaaagatctttcttttat-tgtgtaaaaaggtttt-----gacttaatccatatttttgggttattgt-agTGGCTGCGTTAATGTCAGTGAAGAACAAGATGAAAGATGAGAAAGAGGTTT-TGTC-----TGGTTGGGATATTAACTCTGTTGATCCTTGTACTTGGAACATGGT
upper sequence: GLYMA15G09100.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0003g01490.t01 (Vitis vinifera), 3'ss of exon 1
gtt-tggtgtttcttccttttgcttgtttctcatctttttagctctgtttcagtgagagattgttgttgttgttgggttgttat-----cagTGGCTGCTTTGATGTCCATGAAGAGTAAGACGAATGATGAGTTCCATGTCCATGTCATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGGA------
||| | | || | || |||| |||| | || || | || || | | | | || | || || | ||||||| ||||||||| | ||||||| ||||| ||||||||||| |||| | || |||| ||||||||||| || ||||| || ||||||||| |
gttgttgccttcttctctcatgctatcttctttcttcttcttctttattattgttgttgttgatgtctcttcctcactttttgtttggacagTGGCCGCTTTGATGGCAATGAAGAATAAGATGAATGATGAGTCGAATGTGCTTG------ATGGGTGGGATATTAACTCTGTTGATCCCTGTACTTGGAACATGGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atctttttagctctgtttcagtgagagattgttgttgttgttgggttgttatcagTGGCTGCTTTGATGTCCATGAAGAGTAAGACGAATGATGAGTTCCATGTCCATGTCATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGGA
ttgttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttggtgtttcttccttttgcttgtttctcatctttttagctctgtttcagtgagagattgttgttgttgttgggttgttatcagTGGCTGCTTTGATGTCCATGAAGAGTAAGACGAATGATGAGTTCCATGTCCATGTCATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA