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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatctccatctcattaccccctttcaatccaagttcaacttctcatcagtcattactcatcttattttacttttctaacagATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG

Basic information

species Glycine max
transcript GLYMA15G08610.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G08610.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0003g00640.t01 (Vitis vinifera), 3'ss of exon 3
---------gtcatctccatctcattaccc-cctttcaatccaagttcaacttctcatcagtcattactcatcttattttacttt-tctaacagATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG
          ||| |    | | |||       |||   |  || || || ||   || |   |||  | |  ||   | | |   | |  |||||| || ||||| |||||||||||| ||||||||||||| | ||| |||| ||| |||||||| ||                                
gtctcatttctcaacctttttttattttttatttttttctttaaatttaaatttctattatgaatttttgaatttgagtgattaaattttgcagATGTCGGAAGGTGTTGAACATGAGGTTGTTCCCAAATGAGACTACTGGCAGAGCATGGGACCAAAGC-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4292154|gb|AI441864.1|AI441864
EST:     GTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACAT                         ATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA
genomic: GTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACATgtcatctcca ... tttctaacagATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA
EST: gi|7326886|gb|AW620684.1|AW620684
EST:     GTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACAT                         ATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACAGGCAA
genomic: GTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACATgtcatctcca ... tttctaacagATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA
EST: gi|193437595|gb|FK403056.1|FK403056
EST:     GTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACAT                         ATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA
genomic: GTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACATgtcatctcca ... tttctaacagATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA
EST: gi|7326731|gb|AW620529.1|AW620529
EST:     GTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACAT                         ATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA
genomic: GTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACATgtcatctcca ... tttctaacagATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA
EST: gi|58020386|gb|CX707128.1|CX707128
EST:     TCGGAATCCACGACTCCGATTCAGACGCCGACGCCGATTACAT                         ATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA
genomic: TCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACATgtcatctcca ... tttctaacagATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA
EST: gi|7326594|gb|AW620392.1|AW620392
EST:     GTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACAT                         ATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA
genomic: GTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACATgtcatctcca ... tttctaacagATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA
EST: gi|298180580|gb|HO025667.1|HO025667
EST:     GTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACAT                         ATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA
genomic: GTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACATgtcatctcca ... tttctaacagATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA
EST: gi|193417917|gb|FK384309.1|FK384309
EST:     GTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACAT                         ATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA
genomic: GTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACATgtcatctcca ... tttctaacagATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccaagttcaacttctcatcagtcattactcatcttattttacttttctaacagATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG
                             ctcatcttattttact  CT-rich tract
                                   ttattttacttttcta  TA-rich tract