1 5' 3' | 2 5' 3' |
...tggttatggttgtgttttgcagataaaactttctgagcttgattgatacattcatactcacaacaagtttcatttacccttcattttgctatttaaacagATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGAGTCAAAATGTCTCAATTGTTGCTGAAGAAGATGTTCAAACTCTTTCCAA
species | Glycine max |
transcript | GLYMA15G07450.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAAGGACGACAATTCTCCGGTTACAGTTGCAG ATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGAEST: gi|213590245|gb|DB970085.1|DB970085
genomic: CCAAGGACGACAATTCTCCGGTTACAGTTGCAGgtgaatgttg ... atttaaacagATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGA
EST: TCATCGTCAGGTTCAGTCCAAGGACGACAATTCTCCGGTTACAGTTGCAG ATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGAEST: gi|209720109|gb|BW659483.1|BW659483
genomic: TCATCGTCAGGTTCAGTCCAAGGACGACAATTCTCCGGTTACAGTTGCAGgtgaatgttg ... atttaaacagATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGA
EST: TCATCGTCAGGTTCAGTCCAAGGACGACAATTCTCCGGTTACAGTTGCAG ATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGA
genomic: TCATCGTCAGGTTCAGTCCAAGGACGACAATTCTCCGGTTACAGTTGCAGgtgaatgttg ... atttaaacagATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGA
atacattcatactcacaacaagtttcatttacccttcattttgctatttaaacagATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGAGTCAAAATGTCTCAATTGTTGCTGAAGAAGATGTTCAAACTCTTTCCAA
tactcac putative branch site (score: 1)
attttgctatttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttatggttgtgttttgcagataaaactttctgagcttgattgatacattcatactcacaacaagtttcatttacccttcattttgctatttaaacagATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGAGTCAAAATGTCTCAATTGTTGCTGAAGAAGATGTTCAAACTCTTTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - -ggttgtg
- - - - - - - ttttgca
- - - - - - - - - - - - - - ctttctg
- - - - - - - - - - - - - - - - - - - - - - - -acattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaca