1 5' 3' | 2 5' 3' | 3 5' 3' |
...atcaattatagtttcctttctgagggtattgtttctttgtttgtttcatgctctgatttccttttgtttgatttgatccctctttgaatttctttagcagGTTCTGAAATTTTTAAGCTTTCATCTCAGACAGGGTGTAATAAGAAATGATAGATATAAGTACTCTCAATGCTGCACAGATTACTGTGCTGGGATCCGCG
species | Glycine max |
transcript | GLYMA15G07390.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCATTGAAAGAAGCTGTTGAATCGCGTCGAATAAG GTTCTGAAATTTTTAAGCTTTCATCTCAGACAGGGTGTAATAAGAAATGATEST: gi|298164950|gb|HO010947.1|HO010947
genomic: GCCATTGAAAGAAGCTGTTGAATCGCGTCGAATAAGgtgagtttcg ... tctttagcagGTTCTGAAATTTTTAAGCTTTCATCTCAGACAGGGTGTAATAAGAAATGAT
EST: ATTGAAAGAAGCTGTTGAATCGCGTCGAATAAG GTTCTGAAATTTTTAAGCTTTCATCTCAGACAGGGTGTAATAAGAAATGAT
genomic: ATTGAAAGAAGCTGTTGAATCGCGTCGAATAAGgtgagtttcg ... tctttagcagGTTCTGAAATTTTTAAGCTTTCATCTCAGACAGGGTGTAATAAGAAATGAT
tcatgctctgatttccttttgtttgatttgatccctctttgaatttctttagcagGTTCTGAAATTTTTAAGCTTTCATCTCAGACAGGGTGTAATAAGAAATGATAGATATAAGTACTCTCAATGCTGCACAGATTACTGTGCTGGGATCCGCG
tttcttt CT-rich tract
tttgaatttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaattatagtttcctttctgagggtattgtttctttgtttgtttcatgctctgatttccttttgtttgatttgatccctctttgaatttctttagcagGTTCTGAAATTTTTAAGCTTTCATCTCAGACAGGGTGTAATAAGAAATGATAGATATAAGTACTCTCAATGCTGCACAGATTACTGTGCTGGGATCCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - -ctttctg
- - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctt