1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaattaaatttcacctctgtctcgttacgtttaaggttaaaagtaattctgagctctcttgaagtgaaatccaaacatgtactgaaatgcagGTCGTCCTAAGAGGTTGTTGGTTTTTGTTAATCCGTTTGGTGGGAAGAAATCCGCTACGAAGATTTTCGCTGAACAAGTGAAACCTCTTTTTGAAGATGC
species | Glycine max |
transcript | GLYMA15G07340.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCTCACAGGCTCTGGTGCCATAAACTTCGTGAATTCATTGATTCTCTCG GTCGTCCTAAGAGGTTGTTGGTTTTTGTTAATCCGTTTGGTGGGAAGAAATEST: gi|209719239|gb|BW679792.1|BW679792
genomic: ATCTCACAGGCTCTGGTGCCATAAACTTCGTGAATTCATTGATTCTCTCGgtaaattaaa ... tgaaatgcagGTCGTCCTAAGAGGTTGTTGGTTTTTGTTAATCCGTTTGGTGGGAAGAAAT
EST: ATCTCACAGGCTCTGGTGCCATAAACTTCGTGAATTCATTGATTCTCTCG GTCGTCCTAAGAGGTTGTTGGEST: gi|209715235|gb|BW668563.1|BW668563
genomic: ATCTCACAGGCTCTGGTGCCATAAACTTCGTGAATTCATTGATTCTCTCGgtaaattaaa ... tgaaatgcagGTCGTCCTAAGAGGTTGTTGG
EST: ATCTCACAGGCTCTGGTGCCATAAACTTCGTGAATTCATTGATTCTCTCG GTCGTCCTAAGAGGTTGTTGGTTTTTGTTAATCCGTTTGGTGGGAAGAAATEST: gi|15202824|gb|BI425602.1|BI425602
genomic: ATCTCACAGGCTCTGGTGCCATAAACTTCGTGAATTCATTGATTCTCTCGgtaaattaaa ... tgaaatgcagGTCGTCCTAAGAGGTTGTTGGTTTTTGTTAATCCGTTTGGTGGGAAGAAAT
EST: ATCTCACAGGTTCTGGTGCCATAAACTTCGTGAATTCATTGATTCTCTCG GTCGTCCTAAGAGGTTGTTGGTTTTTGTTAATCCGTTTGGTGGGAAGAAATEST: gi|193437052|gb|FK402961.1|FK402961
genomic: ATCTCACAGGCTCTGGTGCCATAAACTTCGTGAATTCATTGATTCTCTCGgtaaattaaa ... tgaaatgcagGTCGTCCTAAGAGGTTGTTGGTTTTTGTTAATCCGTTTGGTGGGAAGAAAT
EST: ATCTCACAGGCTCTGGTGCCATAAACTTCGTGAATTCATTGATTCTCTCG GTCGTCCTAAGAGGTTGTTGGTTTTTGTTAATCCGTTTGGTGGGAAGAAAT
genomic: ATCTCACAGGCTCTGGTGCCATAAACTTCGTGAATTCATTGATTCTCTCGgtaaattaaa ... tgaaatgcagGTCGTCCTAAGAGGTTGTTGGTTTTTGTTAATCCGTTTGGTGGGAAGAAAT
taaaagtaattctgagctctcttgaagtgaaatccaaacatgtactgaaatgcagGTCGTCCTAAGAGGTTGTTGGTTTTTGTTAATCCGTTTGGTGGGAAGAAATCCGCTACGAAGATTTTCGCTGAACAAGTGAAACCTCTTTTTGAAGATGC
taattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattaaatttcacctctgtctcgttacgtttaaggttaaaagtaattctgagctctcttgaagtgaaatccaaacatgtactgaaatgcagGTCGTCCTAAGAGGTTGTTGGTTTTTGTTAATCCGTTTGGTGGGAAGAAATCCGCTACGAAGATTTTCGCTGAACAAGTGAAACCTCTTTTTGAAGATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG