Sequence
atgc intronic sequence ATGC exonic sequencegtaattataaaattttctatgttttatttgagtgaatttcaagcttgcattttgattgtttataagttttcgtttttaagcgtgttttctattttcttaattgcagGTTCGAGTGTCGTGTGGTGTGGACCATGAAGATTTGAAGCAGCTTTTTAATGTGTCAAGAACTATTAGAGAA
Basic information
species | Glycine max |
transcript | GLYMA15G07320.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G07320.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s0181g00080.t01 (Vitis vinifera), 3'ss of exon 1
------------------------gtaattataaaattttctatgttttatttgagtgaatttcaa---gcttgcattttgattgtttataagttttcgtttttaagcgtgttttctat-------tttcttaattgcagGTTCGAGTGTCGTGTGGTGTGGACCATGAAGATTTGAAGCAGCTTTTTAATGTGTCAAGAACTATTAGAGAA---
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gtaggtagcagatttatgaatttaacttctattgatatttttagatttgattgaatcaattttttattaatttaccttctattgatgttttagatttgattgaatgattttttattaatcataggatttcctttctgcagATTAGGATATTGTGTGGTGTGGATCATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgattgtttataagttttcgtttttaagcgtgttttctattttcttaattgcagGTTCGAGTGTCGTGTGGTGTGGACCATGAAGATTTGAAGCAGCTTTTTAATGTGTCAAGAACTATTAGAGAA
tcttaat putative branch site (score: 3)
tgttttctattttctt CT-rich tract
tttataagttttcgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattataaaattttctatgttttatttgagtgaatttcaagcttgcattttgattgtttataagttttcgtttttaagcgtgttttctattttcttaattgcagGTTCGAGTGTCGTGTGGTGTGGACCATGAAGATTTGAAGCAGCTTTTTAATGTGTCAAGAACTATTAGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC