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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctgaactcaatgtcaatgttccactttatgagaagtttgcgagttattgttttaaggggtgaattttgcttttgcagGTGAATCAGCCTCCCACTGATTCCGTGTCCAGTCTTAGCTTCAGTCCCAAAGCCAACTTCCTCGTCGCCACTTCTTGGGACAATCAG

Basic information

species Glycine max
transcript GLYMA15G05740.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20814762|gb|BQ299240.1|BQ299240
EST:     TGTCGAATTTCCTGAGCAATACTAATCCGAACCCTAATAAGTCCTTCGAG                         GTGAATCAGCCTCCCACTGATTCCGTGTCCAGTCTTAGCTTCAGTCCCAAA
genomic: TGTCGAATTTCCTGAGCAATACTAATCCGAACCCTAATAAGTCCTTCGAGgtacctgaac ... gcttttgcagGTGAATCAGCCTCCCACTGATTCCGTGTCCAGTCTTAGCTTCAGTCCCAAA
EST: gi|4301254|gb|AI443164.1|AI443164
EST:     TGTCGAATTTCCTGAGCAATACTAATCCGAACCCTAATAAGTCCTTCGAG                         GTGAATCAGCCTCCCACTGATTCCGTGTCCAGTCTTAGCTTCAGTCCCAAA
genomic: TGTCGAATTTCCTGAGCAATACTAATCCGAACCCTAATAAGTCCTTCGAGgtacctgaac ... gcttttgcagGTGAATCAGCCTCCCACTGATTCCGTGTCCAGTCTTAGCTTCAGTCCCAAA
EST: gi|207688631|gb|GD673334.1|GD673334
EST:     GAGCAATACTAATCCGAACCCTAATAAGTCCTTCGAG                         GTGAATCAGCCTCCCAACTGATTCCGTGTC
genomic: GAGCAATACTAATCCGAACCCTAATAAGTCCTTCGAGgtacctgaac ... gcttttgcagGTGAATCAGCCTCCCA-CTGATTCCGTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttatgagaagtttgcgagttattgttttaaggggtgaattttgcttttgcagGTGAATCAGCCTCCCACTGATTCCGTGTCCAGTCTTAGCTTCAGTCCCAAAGCCAACTTCCTCGTCGCCACTTCTTGGGACAATCAG
                                         ttttgctttt  CT-rich tract
 agttattgttttaa  TA-rich tract