1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcttccagtgtttgtgggaggcaaatcttaaaggagattgtgggatttggaattttgattacttgtcttctaagttctaactctttttatgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAACTCTTTAAGAG
species | Glycine max |
transcript | GLYMA15G05490.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|207818666|gb|GD791537.1|GD791537
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|209699061|gb|BW664315.1|BW664315
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|193415420|gb|FK381024.1|FK381024
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|254325987|gb|GR838868.1|GR838868
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|207777388|gb|GD746999.1|GD746999
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|208259978|gb|GE059364.1|GE059364
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGEST: gi|207812435|gb|GD785349.1|GD785349
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTG
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGGCTTGATTTTAEST: gi|208035625|gb|GD837313.1|GD837313
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|208199637|gb|GD999920.1|GD999920
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGEST: gi|207682728|gb|GD666359.1|GD666359
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGG
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGAEST: gi|213614966|gb|DB957032.1|DB957032
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|208229089|gb|GE024691.1|GE024691
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|208191874|gb|GD992858.1|GD992858
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGTAGTTTTGATAGAEST: gi|208277460|gb|GE081243.1|GE081243
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGG-AGTTTTGATAGA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|193371093|gb|FK337334.1|FK337334
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|207750186|gb|GD723354.1|GD723354
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|193454939|gb|FK418244.1|FK418244
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTEST: gi|208254346|gb|GE054756.1|GE054756
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTT
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGAEST: gi|209704292|gb|BW683520.1|BW683520
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|298175319|gb|HO015978.1|HO015978
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|208196278|gb|GD988581.1|GD988581
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGEST: gi|192295815|gb|FG990867.1|FG990867
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAG
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|208248940|gb|GE049575.1|GE049575
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|193670965|gb|FK613801.1|FK613801
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|208225034|gb|GE023451.1|GE023451
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|151394349|gb|EV264220.1|EV264220
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|208107899|gb|GD905687.1|GD905687
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|208217077|gb|GE013849.1|GE013849
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAEST: gi|298192766|gb|HO033200.1|HO033200
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
atttggaattttgattacttgtcttctaagttctaactctttttatgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAACTCTTTAAGAG
ttctaac putative branch site (score: 1)
ctctttttat CT-rich tract
aattttgattactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcttccagtgtttgtgggaggcaaatcttaaaggagattgtgggatttggaattttgattacttgtcttctaagttctaactctttttatgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTAACTCTTTAAGAG
tgcttcc
- - - - - - ttgtggg