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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctctctctctctctctgcatattcatatctgtgtgtgttggaattgtttcttatgtttgttagtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCGGGTCCTGCTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTC

Basic information

species Glycine max
transcript GLYMA15G05410.4
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207740233|gb|GD717517.1|GD717517
EST:     AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG                         ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
genomic: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
EST: gi|298196968|gb|HO041735.1|HO041735
EST:     AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG                         ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
genomic: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
EST: gi|193530235|gb|FK486994.1|FK486994
EST:     AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG                         ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAG
genomic: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAG
EST: gi|207770399|gb|GD744141.1|GD744141
EST:     CTTCTTCGCCAACAGCGCGAG                         ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
genomic: CTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
EST: gi|7925292|gb|AW831318.1|AW831318
EST:     AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG                         ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
genomic: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
EST: gi|213590293|gb|DB963856.1|DB963856
EST:     AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCACCAACAGCGCGAG                         ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
genomic: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
EST: gi|208167736|gb|GD963834.1|GD963834
EST:     AACTCCGCAACGAGATCGATGAGCTTCCTCGCCAACAGCGCGAG                         ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
genomic: AACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
EST: gi|254317253|gb|GR826198.1|GR826198
EST:     AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG                         ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
genomic: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catattcatatctgtgtgtgttggaattgtttcttatgtttgttagtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCGGGTCCTGCTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTC
                                              tttttgt  CT-rich tract
                                          ttagttttt  TA-rich tract