1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatttgcatatgaatttaataatttatatctcttgcatcatctttgagttatgtgtcaaatataccgcacaactcttaactatttttttgggggggatagATTTGAGAATATAACCTTCCGGAGAACCAAAGCTTCAGCCAAGGCACGCGGTTCTGTGCCAGTACACATCATAATTTTTGAGGCTGCTGATCGTAATGAT
species | Glycine max |
transcript | GLYMA15G05370.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCACTTCCCAACCCTATTCCGTCCACGATGATGGCCGTTCCTACATCCG ATTTGAGAATATAACCTTCCGGAGAACCAAAGCTTCAGCCAAGGCACGCGGEST: gi|192294780|gb|FG986629.1|FG986629
genomic: GTCACTTCCCAACCCTATTCCGTCCACGATGATGGCCGTTCCTACATCCGgtaacctctc ... ggggggatagATTTGAGAATATAACCTTCCGGAGAACCAAAGCTTCAGCCAAGGCACGCGG
EST: GTCACTTCCCAACCCTATTCCGTCCACGATGATGGCCGTTCCTACATCCG ATTTGAGAATATAACCTTCCGGAGAACCAAAGCTTCAGCCAAGGCACGCGGEST: gi|213595124|gb|DB972058.1|DB972058
genomic: GTCACTTCCCAACCCTATTCCGTCCACGATGATGGCCGTTCCTACATCCGgtaacctctc ... ggggggatagATTTGAGAATATAACCTTCCGGAGAACCAAAGCTTCAGCCAAGGCACGCGG
EST: GTCACTTCCCAACCCTATTCCGTCCACGATGATGGCCGTTCCTACATCCG ATTTGAGAATATAACCTTCCGGAGAACCAAAGCTTCAGCCAAGGCACGCGG
genomic: GTCACTTCCCAACCCTATTCCGTCCACGATGATGGCCGTTCCTACATCCGgtaacctctc ... ggggggatagATTTGAGAATATAACCTTCCGGAGAACCAAAGCTTCAGCCAAGGCACGCGG
gagttatgtgtcaaatataccgcacaactcttaactatttttttgggggggatagATTTGAGAATATAACCTTCCGGAGAACCAAAGCTTCAGCCAAGGCACGCGGTTCTGTGCCAGTACACATCATAATTTTTGAGGCTGCTGATCGTAATGAT
tcttaac putative branch site (score: 2)
tcttaactattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttgcatatgaatttaataatttatatctcttgcatcatctttgagttatgtgtcaaatataccgcacaactcttaactatttttttgggggggatagATTTGAGAATATAACCTTCCGGAGAACCAAAGCTTCAGCCAAGGCACGCGGTTCTGTGCCAGTACACATCATAATTTTTGAGGCTGCTGATCGTAATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - tgcatat
- - - - - - - - - - - - - - -ctcttgc
- - - - - - - - - - - - - - - - - - - - - - - - -tatgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgcaca