1 5' 3' | 2 5' 3' | 3 5' 3' |
...gatttcatctctccattcatattgcttgatgagaatgatgatctttactcttgaatctgtctacatactgacagttatctattttgatttttgtcctcagAAATGGATCCTCTCCCTGATGCCATTCTTCAATACATCTTGTCCCGTATCAATAACGCTCGCGATGTGGCAGCTTGCAATTGTGTTTCTAAGCGATGGAA
species | Glycine max |
transcript | GLYMA15G05200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATCCAAGCCCCCAACCTCAGATCTTCATTCTATTCTGATTTCATACTCT AAATGGATCCTCTCCCTGATGCCATTCTTCAATACATCTTGTCCCGTATCAEST: gi|192300775|gb|FG989702.1|FG989702
genomic: CATCCAAGCCCCCAACCTCAGATCTTCATTCTATTCTGATTTCATACTCTgtaagctctc ... ttgtcctcagAAATGGATCCTCTCCCTGATGCCATTCTTCAATACATCTTGTCCCGTATCA
EST: CATCCAAGCCCCCAACCTCAGATCTTCATTCTATTCTGATTTCATACTCT AAATGGATCCTCTCCCTGATGCCATTCTTCAATACATCTTGTCCCGTATCA
genomic: CATCCAAGCCCCCAACCTCAGATCTTCATTCTATTCTGATTTCATACTCTgtaagctctc ... ttgtcctcagAAATGGATCCTCTCCCTGATGCCATTCTTCAATACATCTTGTCCCGTATCA
tactcttgaatctgtctacatactgacagttatctattttgatttttgtcctcagAAATGGATCCTCTCCCTGATGCCATTCTTCAATACATCTTGTCCCGTATCAATAACGCTCGCGATGTGGCAGCTTGCAATTGTGTTTCTAAGCGATGGAA
tttttgtcctc CT-rich tract
ttatctattttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttcatctctccattcatattgcttgatgagaatgatgatctttactcttgaatctgtctacatactgacagttatctattttgatttttgtcctcagAAATGGATCCTCTCCCTGATGCCATTCTTCAATACATCTTGTCCCGTATCAATAACGCTCGCGATGTGGCAGCTTGCAATTGTGTTTCTAAGCGATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - -tctctcc
- - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgac