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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattattactcttctatgcacttctatgcttatttaccctttctttcatttcttttcaattggcttacctaaataatttttgaggatgaagatttatttattcttaattttcagGTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTGGCCTCGTTGGACTTGTACTCTGTCATCATGGAAATTACTTTAGGCTCAG

Basic information

species Glycine max
transcript GLYMA15G05100.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298195343|gb|HO039174.1|HO039174
EST:     TCCCCAGTCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCG                         GTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTG
genomic: TCCCCAGTCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCGgttattatta ... taattttcagGTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTG
EST: gi|18734259|gb|BM528080.1|BM528080
EST:     TCCCCAGTCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCG                         GTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTG
genomic: TCCCCAGTCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCGgttattatta ... taattttcagGTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTG
EST: gi|26045603|gb|CA783140.1|CA783140
EST:     TCCCCAGTCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCG                         GTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTG
genomic: TCCCCAGTCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCGgttattatta ... taattttcagGTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTG
EST: gi|298193280|gb|HO033714.1|HO033714
EST:     TCCCCAGTCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCG                         GTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTG
genomic: TCCCCAGTCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCGgttattatta ... taattttcagGTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTG
EST: gi|24206065|gb|BU965318.1|BU965318
EST:     TCCCCAGTCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCG                         GTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTG
genomic: TCCCCAGTCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCGgttattatta ... taattttcagGTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTG
EST: gi|9898820|gb|BE607788.1|BE607788
EST:     TCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCG                         GTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTG
genomic: TCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCGgttattatta ... taattttcagGTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTG
EST: gi|298199382|gb|HO042745.1|HO042745
EST:     TCCCCAGTCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCG                         GTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTG
genomic: TCCCCAGTCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCGgttattatta ... taattttcagGTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggcttacctaaataatttttgaggatgaagatttatttattcttaattttcagGTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTGGCCTCGTTGGACTTGTACTCTGTCATCATGGAAATTACTTTAGGCTCAG
                                          tcttaat  putative branch site (score: 3)
                                     tttattctt  CT-rich tract
                          atgaagatttatttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttattattactcttctatgcacttctatgcttatttaccctttctttcatttcttttcaattggcttacctaaataatttttgaggatgaagatttatttattcttaattttcagGTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTGGCCTCGTTGGACTTGTACTCTGTCATCATGGAAATTACTTTAGGCTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA