Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatacgattaagcttctaactctgcagacgtttctactacgttgtgatttccttcaatggcgttacgatttcattcattcattttttcaaattttgtttgttgaaatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGAACCAACTTAAGGATCTCAAAGCAGAACTCGCTCTCCTCCGCGTCGCTAA

Basic information

species Glycine max
transcript GLYMA15G04730.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258928|gb|BG881827.1|BG881827
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAATAGCAGAGCTTCTA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAA-AGCAGAGCTTCT-
EST: gi|298193744|gb|HO040392.1|HO040392
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGG                         CGATAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
EST: gi|26269460|gb|CA820523.1|CA820523
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
EST: gi|298199272|gb|HO042635.1|HO042635
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGTACTAGACAAAAGCAGAGCTTCTGA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
EST: gi|22539768|gb|BU089611.1|BU089611
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
EST: gi|14259744|gb|BG882652.1|BG882652
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
EST: gi|7028584|gb|AW458367.1|AW458367
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
EST: gi|208165258|gb|GD964422.1|GD964422
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCGGAGCTTCTGA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
EST: gi|7233279|gb|AW568627.1|AW568627
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
EST: gi|298185885|gb|HO031046.1|HO031046
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATCAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
EST: gi|193541875|gb|FK496645.1|FK496645
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
EST: gi|4313402|gb|AI460521.1|AI460521
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
EST: gi|298173583|gb|HO016919.1|HO016919
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
EST: gi|193343178|gb|FK305772.1|FK305772
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
EST: gi|6341759|gb|AW164645.1|AW164645
EST:     TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA
genomic: TTTCTCACGTTCCTCTTCGCAGCGCCACAGTAGCTTCGCATTAGCAATGGgtacatacga ... aatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgttacgatttcattcattcattttttcaaattttgtttgttgaaatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGAACCAACTTAAGGATCTCAAAGCAGAACTCGCTCTCCTCCGCGTCGCTAA
        atttcattcattcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacatacgattaagcttctaactctgcagacgtttctactacgttgtgatttccttcaatggcgttacgatttcattcattcattttttcaaattttgtttgttgaaatgcaaaagCGAGAATCAAGGTGTACGAGCTGAGGTACAAGACAAAAGCAGAGCTTCTGAACCAACTTAAGGATCTCAAAGCAGAACTCGCTCTCCTCCGCGTCGCTAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC