Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtgctctatactctcccattgtctctccgtctggttcagttcatataacgagtcttatgttcgtgttgtttttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG

Basic information

species Glycine max
transcript GLYMA15G04670.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209725405|gb|BW651549.1|BW651549
EST:     GCCTCTGCTTCCTACACGCAG                         GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
genomic: GCCTCTGCTTCCTACACGCAGgttgtgctct ... tttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
EST: gi|213607965|gb|DB963023.1|DB963023
EST:     GCCTCTGCTTCCTACACGCAG                         GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
genomic: GCCTCTGCTTCCTACACGCAGgttgtgctct ... tttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
EST: gi|298178914|gb|HO024649.1|HO024649
EST:     GCCTCTGCTTCCTACACGCAG                         GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
genomic: GCCTCTGCTTCCTACACGCAGgttgtgctct ... tttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
EST: gi|298179054|gb|HO024789.1|HO024789
EST:     GGTGCCTCTGCTTCCTACACGCAG                         GGTTTCCCGAAGATTTAACACCTATGGTTCCTAAAG
genomic: GGTGCCTCTGCTTCCTACACGCAGgttgtgctct ... tttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
EST: gi|213611697|gb|DB969085.1|DB969085
EST:     GGTGCCTCTGCTTCCTACACGCAG                         GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
genomic: GGTGCCTCTGCTTCCTACACGCAGgttgtgctct ... tttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
EST: gi|209712413|gb|BW671265.1|BW671265
EST:     GCCTCTGCTTCCTACACGCAG                         GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
genomic: GCCTCTGCTTCCTACACGCAGgttgtgctct ... tttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
EST: gi|209723033|gb|BW668879.1|BW668879
EST:     GCCTCTGCTTCCTACACGCAG                         GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
genomic: GCCTCTGCTTCCTACACGCAGgttgtgctct ... tttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
EST: gi|213619677|gb|DB965623.1|DB965623
EST:     GCCTCTGCTTCCTACACGCAG                         GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
genomic: GCCTCTGCTTCCTACACGCAGgttgtgctct ... tttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
EST: gi|192313125|gb|FK004701.1|FK004701
EST:     GCCTCTGCTTCCTACACGCAG                         GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
genomic: GCCTCTGCTTCCTACACGCAGgttgtgctct ... tttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
EST: gi|192313126|gb|FK004702.1|FK004702
EST:     GCCTCTGCTTCCTACACGCAG                         GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
genomic: GCCTCTGCTTCCTACACGCAGgttgtgctct ... tttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
EST: gi|213593833|gb|DB957953.1|DB957953
EST:     GGTGCCTCTGCTTCCTACACGCAG                         GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
genomic: GGTGCCTCTGCTTCCTACACGCAGgttgtgctct ... tttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
EST: gi|298191234|gb|HO038713.1|HO038713
EST:     TGCCTCTGCTTCCTACACGCAG                         GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
genomic: TGCCTCTGCTTCCTACACGCAGgttgtgctct ... tttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
EST: gi|298166750|gb|HO010189.1|HO010189
EST:     CCTCTGCTTCCTACACGCAG                         GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
genomic: CCTCTGCTTCCTACACGCAGgttgtgctct ... tttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgtctggttcagttcatataacgagtcttatgttcgtgttgtttttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG
                 atataac  putative branch site (score: 3)
                                      tgttgtttttctttt  putative PPT
                                        ttgtttttctttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttgtgctctatactctcccattgtctctccgtctggttcagttcatataacgagtcttatgttcgtgttgtttttcttttagGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA