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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccccctaccctgcgccctccctcacccgatcaactccctttctctctttccgtcttagcgtggattttccgcacccttttgattgatcttccctttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCT

Basic information

species Glycine max
transcript GLYMA15G04470.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04470.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 3'ss of exon 1
gtgccccctaccctgcgccctccctcacccgatcaactccctttctctctttccgtcttagcgtggattttccgcacccttttgattgatcttccctttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCT
              |   |   ||       |  | |||    |        |||| || | | |||||   || | | | ||  ||  |  | | ||||   |||||||||| ||||||||||| |||||||| || ||||||||||||||||| | ||| || |||||||||||||| || || ||||||||||||||||||||
--------------gtaacgatccaattttaa--atctcttcgttaagaacaccgttttggagcggatt---cgaaacttcttttttttttattcatttg---cagATCTTTGTAAAAACCCCGTTGATGGCTTCTCCGCCGGTTTGGTCGACGAGAGCAATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408087|gb|EV277895.1|EV277895
EST:     GTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAG                         AACTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
genomic: GTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgcccccta ... tttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
EST: gi|16996926|gb|BM086298.1|BM086298
EST:     GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
genomic: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgcccccta ... tttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
EST: gi|192331436|gb|FK019909.1|FK019909
EST:     GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
genomic: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgcccccta ... tttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
EST: gi|5688311|gb|AI941326.1|AI941326
EST:     GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
genomic: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgcccccta ... tttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
EST: gi|192330035|gb|FK020851.1|FK020851
EST:     GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
genomic: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgcccccta ... tttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
EST: gi|18732524|gb|BM527091.1|BM527091
EST:     GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
genomic: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgcccccta ... tttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgtcttagcgtggattttccgcacccttttgattgatcttccctttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCT
                                  ttgatcttcccttt  CT-rich tract
                            ttttgatt  TA-rich tract