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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcttcttctctcatcacctaaaagcacaattttattttcattgagattataatttaaaaatcatgtgtcatacattgttgcaatgactaatgaatactttgtaggtacatacgttgttgacattttttaatttttatttagATTAGAGAAGATGGGTGCTCTTGAAGTGGGTAAAGTGATTCATAGACACCAGGTTTGGCGCCTTTTCTCTTGTATATGGTTGCACGGTGGGGTTGTTCAT

Basic information

species Glycine max
transcript GLYMA15G04230.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04230.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g04890.t01 (Vitis vinifera), 3'ss of exon 1
gtgagttcttcttctctcatcacctaaaagcacaattttattttcattgagattataatttaaaaatcatgtgtcatacattgttgcaatgactaatgaatactt---tgtaggtac-atacgttgttgacattttttaatttttatttagATTAGAGAAGATGGGTGCTCTTGAAGTGGGTAAAGTGATTCATAGACACCAGGTTTGGCGCCTTTTCTCTTGTATATGGTTGCACGGTGGGGTTGTTCAT
                                                 |  | | | |  |  |||| | |||  || ||| || | | ||     ||||| ||   || ||| |  |||  |     ||| || |    |||| |  ||  ||||||||||||||||||| ||||||  ||| ||| | |||||||| ||||||||||| ||  |||||||||||||| | || | ||||||  | |||
-------------------------------------------------atgtcaca-tggagcaatcttctgtt-taaattattacgaagatgtgagaatagttgcatgaagggatgatatctaacctacaattctctgcttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAGGTTTGGCGTCTGATCTCTTGTATATGGCTACATGCTGGGGTGTTCCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaatgaatactttgtaggtacatacgttgttgacattttttaatttttatttagATTAGAGAAGATGGGTGCTCTTGAAGTGGGTAAAGTGATTCATAGACACCAGGTTTGGCGCCTTTTCTCTTGTATATGGTTGCACGGTGGGGTTGTTCAT
                                            tttttattt  CT-rich tract
                           ttgttgacatttttta  TA-rich tract