1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaacgtttcacaaaaatttctcatacgctcatatttattatgtgattggatcgtgatcattggcatttgtttatctttttttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
species | Glycine max |
transcript | GLYMA15G04140.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAG GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGEST: gi|298175906|gb|HO015311.1|HO015311
genomic: TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttc ... tttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
EST: TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAG GCACGCGCACACCATCAAGTCATCTTCTGGTCTGCTGGTATCTATGEST: gi|193552697|gb|FK506192.1|FK506192
genomic: TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttc ... tttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
EST: TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTCCATCGTTCAGTCTAAG GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGEST: gi|16349341|gb|BI974936.1|BI974936
genomic: TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttc ... tttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
EST: TGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAG GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGEST: gi|120533678|gb|EH261811.1|EH261811
genomic: TGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttc ... tttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
EST: TGACTCTCGGG-TTTACAACGCAGCTTTTCATCGTTCAGTCTAAG GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGEST: gi|15664016|gb|BI701387.1|BI701387
genomic: TGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttc ... tttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
EST: CTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAG GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGEST: gi|213611480|gb|DB972797.1|DB972797
genomic: CTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttc ... tttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
EST: TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAG GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
genomic: TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttc ... tttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
ttattatgtgattggatcgtgatcattggcatttgtttatctttttttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
tttgtttatctttttt CT-rich tract
atttgtttatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgtttcacaaaaatttctcatacgctcatatttattatgtgattggatcgtgatcattggcatttgtttatctttttttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT