Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgatactagtattttattttatccccttttcactgtaattagggttccaagtttcaaaactataataataataataatttctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCACCACCATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATT

Basic information

species Glycine max
transcript GLYMA15G03990.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03990.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os11g48030.1 (Oryza sativa), 3'ss of exon 1
gttcga-tactagtattttattttatccccttttcactg-taattagggttccaagtttcaaaactataataataataataatttctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCACCACCATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATT
|||||  | ||      |   |  ||||  ||  |  || |   |      | |  || |       ||   |  | |   |  ||    | |||  | ||| | |||| ||   | ||||| ||||  || || |||||||||||| |||| ||||||||||| ||||||||||| || |||   ||||| | 
gttcgtctccttccccatctatcgatccgattcgctttgctttctcaaaccctagattgccttgaattatccaccaaatccaaatccaacacagGCGGCTTCTCCGAGACGCGCGAGGGCGAGGTTAGGTTCCCCGAGATCAGCACCCCCATCCTCGAGAAGATCTGCCAGTACTTCTACTGGTCGCTCCACTA

upper sequence: GLYMA15G03990.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g05560.t01 (Vitis vinifera), 3'ss of exon 1
---gttcgatactagt--attttattttatccccttttcactgtaattagggttccaagtttcaaaacta-taataataataataatttctttgat--agGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCACCACCATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATT
    |   ||  | ||  ||||   || ||  ||||| ||    ||     |||   | |||   |   | |  | |  |   |  ||  |  | |  |||||| || || || ||| | || || ||||| || || || ||||| |||||||||||||| |||||||| |||||||| || || |||  ||| |||||
tatatgaaattttggtttatttgtcttaatttcctttgcaaccaaacggttgtttggaatttgggagtgagttctgactaggttttttggtcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCACCACCATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208173876|gb|GD969027.1|GD969027
EST:     AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgatact ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|209709159|gb|BW674024.1|BW674024
EST:     AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgatact ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|7327221|gb|AW620943.1|AW620943
EST:     AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgatact ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|9987356|gb|BE661464.1|BE661464
EST:     AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgatact ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|192326809|gb|FK018561.1|FK018561
EST:     AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgatact ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|193418294|gb|FK385150.1|FK385150
EST:     TAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: TAACATGCTTACTTCTCCAGgttcgatact ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|6914936|gb|AW396466.1|AW396466
EST:     AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgatact ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|192297355|gb|FG990661.1|FG990661
EST:     AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgatact ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|37994047|gb|CF805793.1|CF805793
EST:     AAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgatact ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|15812339|gb|BI784614.1|BI784614
EST:     AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATAGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgatact ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaattagggttccaagtttcaaaactataataataataataatttctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCACCACCATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATT
                                           tttcttt  CT-rich tract
              aagtttcaaaactata  TA-rich tract