1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gcaaaagaggaatttcgtcggtgcttttgtatctgaattagtttgtggttcaagataatgtgaaagtttccttattattggccttattgtcttcctacagTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAA
species | Glycine max |
transcript | GLYMA15G02640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAG TGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTAEST: gi|208253993|gb|GE052541.1|GE052541
genomic: ATTCTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAGgtaattgtcc ... cttcctacagTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTA
EST: ATTCTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAG TGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTAEST: gi|24205994|gb|BU965247.1|BU965247
genomic: ATTCTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAGgtaattgtcc ... cttcctacagTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTA
EST: ATTCTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAG TGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTAEST: gi|207825949|gb|GD799746.1|GD799746
genomic: ATTCTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAGgtaattgtcc ... cttcctacagTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTA
EST: ATTCTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAG TGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTAEST: gi|207704778|gb|GD685159.1|GD685159
genomic: ATTCTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAGgtaattgtcc ... cttcctacagTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTA
EST: ATTCTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAG TGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTA
genomic: ATTCTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAGgtaattgtcc ... cttcctacagTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTA
tggttcaagataatgtgaaagtttccttattattggccttattgtcttcctacagTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAA
ccttattgtcttcct CT-rich tract
ttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaaagaggaatttcgtcggtgcttttgtatctgaattagtttgtggttcaagataatgtgaaagtttccttattattggccttattgtcttcctacagTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAA
- - - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - - - - - gtttgtg