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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttccttctctccatttcccctgattggttgttattgaattgcacgattcttaaattcaattcaaatttcgttgttgttatcccaatcagGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAG

Basic information

species Glycine max
transcript GLYMA15G01360.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400645|gb|BM177427.1|BM177427
EST:     TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAG                         GTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
genomic: TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGgttttccttc ... tcccaatcagGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
EST: gi|254322314|gb|GR837728.1|GR837728
EST:     TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAG                         GTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAAATTGCTACC
genomic: TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGgttttccttc ... tcccaatcagGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCC-AATTGCTACC
EST: gi|7589397|gb|AW705172.1|AW705172
EST:     TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAG                         GTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
genomic: TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGgttttccttc ... tcccaatcagGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
EST: gi|192320916|gb|FK013110.1|FK013110
EST:     TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAG                         GTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
genomic: TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGgttttccttc ... tcccaatcagGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
EST: gi|192333618|gb|FK025435.1|FK025435
EST:     TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAG                         GTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
genomic: TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGgttttccttc ... tcccaatcagGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
EST: gi|298195945|gb|HO044336.1|HO044336
EST:     TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAG                         GTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
genomic: TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGgttttccttc ... tcccaatcagGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
EST: gi|21677694|gb|BQ630045.1|BQ630045
EST:     TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAG                         GTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
genomic: TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGgttttccttc ... tcccaatcagGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
EST: gi|254322313|gb|GR837727.1|GR837727
EST:     TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAG                         GTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
genomic: TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGgttttccttc ... tcccaatcagGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
EST: gi|33388406|gb|CA851613.1|CA851613
EST:     TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAG                         GTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
genomic: TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGgttttccttc ... tcccaatcagGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
EST: gi|15814678|gb|BI786953.1|BI786953
EST:     TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAG                         GTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
genomic: TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGgttttccttc ... tcccaatcagGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
EST: gi|5677887|gb|AI939017.1|AI939017
EST:     TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAG                         GTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG
genomic: TCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGgttttccttc ... tcccaatcagGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaattgcacgattcttaaattcaattcaaatttcgttgttgttatcccaatcagGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAG
                                          ttatccc  CT-rich tract
           attcttaaattcaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttttccttctctccatttcccctgattggttgttattgaattgcacgattcttaaattcaattcaaatttcgttgttgttatcccaatcagGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT