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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcctgcttttgtctttgtctttacctctccttttcatggatacccttctaggaggttgcagcagcactctatagtcactatacatacatggcaatgcatattcacacattttattccaactccaccatacccttctgggtataaaggggcatcaccatcctgcattttcttcattgcagAACCTCTTCATACTCATTGCAGTTGCAGTACGTGGGGGGTGCTTTCAACACTTTCTTCAATCAGCAAAATGAGTCATGCACATTCTCATATGGGCTCTG

Basic information

species Glycine max
transcript GLYMA15G01350.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01350.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0002g06010.t01 (Vitis vinifera), 3'ss of exon 1
gtttcctgcttttgtctttgtctttacctctccttttcatggataccct-------------tctaggaggttgcagcagcactctatagtcactatacata--catggcaatgcatattcacacattttattccaactccaccatacccttctgggtataaaggggcatcaccatcctgcattttcttcattgcagAACCTCTTCATACTCATTGCAGTTGCAGTACGTGGGGGGTGCTTTCAACACTTTCTTCAATCAGCAAAATGAGTCATGCACATTCTCATATGGGCTCTG
     ||||||||||| ||||||||||||||||||||||||||| | ||             |||||| |||| |||   || | | |||    |  ||| |  ||| |   |||||||||| |  ||||||||||  | |||| ||||| | || |||||||      |   |||  ||  ||||||||||||||| ||||||||||| ||||| || | |        | ||  |  || |  ||||| |      |   |  |||||  |  |  ||  |  |||||| ||||
---gtctgcttttgtccttgtctttacctctccttttcatggatgctctatctttttgagtttctaggcggtttcaggcacaatgtgtagctggtgcacacaagcatagtgttgcatattcatatgttttattccattttcaccctacccatttgtgtataaatacagtttctcattttgggttttcttcattgcagTACCTCTTCATATTCATTACAATAG--------GTGGCCTCTTTACTGCACTTGCCCGGTCCGTGACGATGAGCTACTCTAATCATTCTATGGGTTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717358|gb|BW659048.1|BW659048
EST:     GGAATGGATGATTGTGCTCTGCTCTGCTTTGATTCTCTCTGCTCATAAAG                         AACCTCTTCATACTCATTGCAGTTGCAGTACGTGGGGGGTGCTTTCAACAC
genomic: GGAATGGATGATTGTGCTCTGCTCTGCTTTGATTCTCTCTGCTCATAAAGgtttcctgct ... ttcattgcagAACCTCTTCATACTCATTGCAGTTGCAGTACGTGGGGGGTGCTTTCAACAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatacccttctgggtataaaggggcatcaccatcctgcattttcttcattgcagAACCTCTTCATACTCATTGCAGTTGCAGTACGTGGGGGGTGCTTTCAACACTTTCTTCAATCAGCAAAATGAGTCATGCACATTCTCATATGGGCTCTG
                                 tcctgcattttcttc  CT-rich tract
                                       attttctt  TA-rich tract