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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcctccttctattcttcttccatcgatatattctgcttttacgcatgataattaatgaatgaatcaagtttcgttttggtgttagGTTGGACGGAAGCCTCTCGTTTGCGTTGTCGGCGTCCCAAATCACATGACCTATGCGGATTTCTGCCAGTTCTGTGGTTCCTTCATTCAGCACATGCTAG

Basic information

species Glycine max
transcript GLYMA15G00770.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00770.2 (Glycine max), 3'ss of exon 1
lower sequence: AT2G26000.2 (Arabidopsis thaliana), 3'ss of exon 2
---gtatcctccttct-----attc-ttcttcca-tcgat---atattctgcttttacgcatgataatta-atgaatgaatcaagtttcgttttggtgttagGTTGGACGGAAGCCTCTCGTTTGCGTTGTCGGCGTCCCAAATCACATGACCTATGCGGATTTCTGCCAGTTCTGTGGTTCCTTCATTCAGCACATGCTAG
    ||| |  || ||     |||| |||||||  | |||   ||    | |||||   ||    ||||| |||  ||||||  |  |  ||||| | |||| ||||| |||| ||||||||||||||| | || || || || |||||||| ||||| ||||| ||||||||||| || ||||||||||||||||| || |
gtaatattcctctcctctatgattcattcttccgcttgattgcatcgatttctttttttcactggaattatatgtttgaatctggaataattttg-ttttagATTGGAAGGAACCCTCTCGTTTGCGTTCTTGGGGTGCCCAACCACATGACATATGCAGATTTTTGCCAGTTCTGCGGCTCCTTCATTCAGCACATACTGG

upper sequence: GLYMA15G00770.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s0125g00250.t01 (Vitis vinifera), 3'ss of exon 1
-------gtatcctccttctattc--ttcttccatcgatatattctgcttttacgcatgataattaatgaatgaatcaagtttcgt---tttggtg-ttagGTTGGACGGAAGCCTCTCGTTTGCGTTGTCGGCGTCCCAAATCACATGACCTATGCGGATTTCTGCCAGTTCTGTGGTTCCTTCATTCAGCACATGCTAG
         ||  |  || | ||   || || | | |  | ||  || || || |  |   | ||   |||  ||||   |||  |   | || || |||||||||| ||||  |||| || || ||  | || || |||||||||||||| ||||| |||||||||||||| |||||||| |||||||| |||||| | |
aacttacaaattatttttgtttttagttatttccttggaagata-tgtttgtaagtttataagttttagaagtaatcttcttttttgcttctgatggttagGTTGGAAGGAAAGCTCTTGTCTGTGTCCTTGGGGTGCCAAATCACATGACATATGCAGATTTCTGCCAGTTTTGTGGTTCATTCATTCAACACATGTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgcttttacgcatgataattaatgaatgaatcaagtttcgttttggtgttagGTTGGACGGAAGCCTCTCGTTTGCGTTGTCGGCGTCCCAAATCACATGACCTATGCGGATTTCTGCCAGTTCTGTGGTTCCTTCATTCAGCACATGCTAG
                   aattaat  putative branch site (score: 3)
                                      tttcgtttt  putative PPT
                 ataattaatgaatgaa  TA-rich tract