1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtataaacgtacatatagcgtccaagatcttctgtggaatgtttccctcagaataataattaattctttcttgtgtcctgattaaaaaaaaaatctttctttcttgtgtgttcatttcagAAAAAGCAGGTGGAAAACAATTTTTTCTCATTGGATTTGGAGGTGAAGAAATCTTCTGTAAAACAAGAG
species | Glycine max |
transcript | GLYMA15G00570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCCTTGGATCTCAACATTAATCTCCATAGGGTTCACGAAGAACTTCCC AAAAAGCAGGTGGAAAACAATTTTTTCTCATTGGATTTGGAGGTGAAGAAAEST: gi|17153505|gb|BM143438.1|BM143438
genomic: CTTCCTTGGATCTCAACATTAATCTCCATAGGGTTCACGAAGAACTTCCCgtaagtataa ... ttcatttcagAAAAAGCAGGTGGAAAACAATTTTTTCTCATTGGATTTGGAGGTGAAGAAA
EST: CTTCCTTGGATCTCAACATTAATCTCCATAGGGTTCACGAAGAACTTCCC AAAAAGCAGGTGGAAAACAATTTTTTCTCATTGGATTTGGAGGTGAAGAAAEST: gi|17401736|gb|BM178518.1|BM178518
genomic: CTTCCTTGGATCTCAACATTAATCTCCATAGGGTTCACGAAGAACTTCCCgtaagtataa ... ttcatttcagAAAAAGCAGGTGGAAAACAATTTTTTCTCATTGGATTTGGAGGTGAAGAAA
EST: CTTCCTTGGATCTCAACATTAATCTCCATAGGGTTCACGAAGAACTTCCC AAAAAGCAGGTGGAAAACAATTTTTTCTCATTGGATTTGGAGGTGAAGAAAEST: gi|209698492|gb|BW652384.1|BW652384
genomic: CTTCCTTGGATCTCAACATTAATCTCCATAGGGTTCACGAAGAACTTCCCgtaagtataa ... ttcatttcagAAAAAGCAGGTGGAAAACAATTTTTTCTCATTGGATTTGGAGGTGAAGAAA
EST: CTTCCTTGGATCTCAACATTAATCTCCATAGGGTTCACGAAGAACTTCCC AAAAAGCAGGTGGAAAACAATTTTTTCTCATTGGATTTGGAGGTGAAGAAAEST: gi|209717341|gb|BW659044.1|BW659044
genomic: CTTCCTTGGATCTCAACATTAATCTCCATAGGGTTCACGAAGAACTTCCCgtaagtataa ... ttcatttcagAAAAAGCAGGTGGAAAACAATTTTTTCTCATTGGATTTGGAGGTGAAGAAA
EST: CTTCCTTGGATCTCAACATTAATCTCCATAGGGTTCACGAAGAACTTCCC AAAAAGCAGGTGGAAAACAATTTTTTCTCATTGGATTTGGAGGTGAAGAAA
genomic: CTTCCTTGGATCTCAACATTAATCTCCATAGGGTTCACGAAGAACTTCCCgtaagtataa ... ttcatttcagAAAAAGCAGGTGGAAAACAATTTTTTCTCATTGGATTTGGAGGTGAAGAAA
ctttcttgtgtcctgattaaaaaaaaaatctttctttcttgtgtgttcatttcagAAAAAGCAGGTGGAAAACAATTTTTTCTCATTGGATTTGGAGGTGAAGAAATCTTCTGTAAAACAAGAG
tcctgat putative branch site (score: 3)
ttcatttc putative PPT
tgattaaaaaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtataaacgtacatatagcgtccaagatcttctgtggaatgtttccctcagaataataattaattctttcttgtgtcctgattaaaaaaaaaatctttctttcttgtgtgttcatttcagAAAAAGCAGGTGGAAAACAATTTTTTCTCATTGGATTTGGAGGTGAAGAAATCTTCTGTAAAACAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA