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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctttccctttccctttccctttccttcctctcctcctatctcatctctctctctctctctctctcttcttttcttagGGATGGGTCTTCTTCTTCACCTTATTGGGGATTACTCCTTCGGCAGAACGTCTCGGTTATGCTACCGA

Basic information

species Glycine max
transcript GLYMA15G00380.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00380.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0018g01840.t01 (Vitis vinifera), 3'ss of exon 2
-----------gtaagcctttccctttccctttccctttccttcctctcctc------ctatctcatctctctctctctctctctctcttcttttcttagGGATGGGTCTTCTTCTTCACCTTATTGGGGATTACTCCTTCGGCAGAACGTCTCGGTTATGCTACCGA
            | | || ||   | ||||    | |||  || |   ||||        ||  | | |   |  || |   ||| | ||  | | ||||||||||||||||||||||| |||||| || ||||| ||||  || || ||| | |||| ||| |||||
gtggcatcttgttcaaccattatttctcccagctcattttatttcaagcctcagcaattaataccttattcgttgctgtaattctatttttgtgttttagGGATGGGTCTTCTTCTTCAGCTTATTAGGTATTACCCCTTTAGCCGAGCGTTTGGGTTTTGCCACCGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213610489|gb|DB958794.1|DB958794
EST:     TTCCCTTTGGTCCATTCGCCATTCTCCTACATTACGTAACTGGACACCAT                         GGATGGGTCTTCTTCTTCACCTTATTGGGGATTACTCCTTCGGCAGAACGT
genomic: TTCCCTTTGGTCCATTCGCCATTCTCCTACATTACGTAACTGGACACCATgtaagccttt ... cttttcttagGGATGGGTCTTCTTCTTCACCTTATTGGGGATTACTCCTTCGGCAGAACGT
EST: gi|213614610|gb|DB972850.1|DB972850
EST:     TTCCCTTTGGTCCATTCGCCATTCTCCTACATTACGTAACTGGACACCAT                         GGATGGGTCTTCTTCTTCACCTTATTGGGGATTACTCCTTCGGCAGAACGT
genomic: TTCCCTTTGGTCCATTCGCCATTCTCCTACATTACGTAACTGGACACCATgtaagccttt ... cttttcttagGGATGGGTCTTCTTCTTCACCTTATTGGGGATTACTCCTTCGGCAGAACGT
EST: gi|209711678|gb|BW674041.1|BW674041
EST:     TTCCCTTTGGTCCATTCGCCATTCTCCTACATTACGTAACTGGACACCAT                         GGATGGGTCTTCTTCTTCACCTTATTGGGGATTACTCCTTCGGCAGAACGT
genomic: TTCCCTTTGGTCCATTCGCCATTCTCCTACATTACGTAACTGGACACCATgtaagccttt ... cttttcttagGGATGGGTCTTCTTCTTCACCTTATTGGGGATTACTCCTTCGGCAGAACGT
EST: gi|209715667|gb|BW674353.1|BW674353
EST:     TTCCCTTTGGTCCATTCGCCATTCTCCTACATTACGTAACTGGACACCAT                         GGATGGGTCTTCTTCTTCACCTTATTGGGGATTACTCCTTCGGCAGAACGT
genomic: TTCCCTTTGGTCCATTCGCCATTCTCCTACATTACGTAACTGGACACCATgtaagccttt ... cttttcttagGGATGGGTCTTCTTCTTCACCTTATTGGGGATTACTCCTTCGGCAGAACGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttcctctcctcctatctcatctctctctctctctctctctcttcttttcttagGGATGGGTCTTCTTCTTCACCTTATTGGGGATTACTCCTTCGGCAGAACGTCTCGGTTATGCTACCGA
       ctcctcctatctcatc  CT-rich tract
                                              ttttctta  TA-rich tract