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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattctttctatctgtccatctatattcaatattcgcttcttctttgttcatctttttttgtcaatttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGGATCTTGCACAG

Basic information

species Glycine max
transcript GLYMA14G39760.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G39760.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os08g40170.1 (Oryza sativa), 3'ss of exon 1
-------------------------------------------------gtaattctttctatctgtccatcta---tattca-atattcgcttcttctttgttcatctttttttgtcaatttggttg------------------cagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGGATCTTGCACAG--------------------------------------
                                                  |  || ||| |  | || ||       | ||    |    || || ||  ||||  |||  ||   |     || |||                  |||| | ||||||||||||| ||||||||||||||||||||||| || |  ||  |  ||||| |                                      
gtatccatccggctacgaccgcttcagatctggatcaggggttcttcttcttgtttttttttcccgtgcacgcggggtgtttgtgtgaatgcctcgtccgtgtttgtctggttcgatgggggtgattgatgggggatgcgcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGGACCGCAAGA

upper sequence: GLYMA14G39760.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0122g00550.t01 (Vitis vinifera), 3'ss of exon 2
----------gtaattctttctatctg-tccatctatattcaa----------tattcgcttcttct-ttgttcatcttttttt---gtcaatttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGGATCTTGCACAG
            ||   | ||| |||  |||||    |  |||          || | | | | ||| |||   ||  ||  |     | | |||   |||||||||||||||||||  | ||||| || |||||||||||||| ||||||||| | ||||||||
gtatgaaccaacaaccatctctttctcctccatggggacccaaaaaattgttgtagttgttccatctgttgactataattaatacaaataatttttaatgcagAGCTTGATGTACCAATTATGCAAAGGTGTTGCTTTCTGCCATGGTCATGGGGTATTGCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300400|gb|FG987887.1|FG987887
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|208048241|gb|GD844778.1|GD844778
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|193639270|gb|FK586491.1|FK586491
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAG
EST: gi|207802901|gb|GD776214.1|GD776214
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTT
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTT
EST: gi|151407880|gb|EV277695.1|EV277695
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|208042518|gb|GD840944.1|GD840944
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|208117077|gb|GD915863.1|GD915863
EST:     CGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: CGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|193597424|gb|FK551882.1|FK551882
EST:     ATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: ATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|193628507|gb|FK577177.1|FK577177
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|208281394|gb|GE077630.1|GE077630
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|208316042|gb|GE117352.1|GE117352
EST:     CGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATACAAA
genomic: CGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCAT-CAAA
EST: gi|17153415|gb|BM143348.1|BM143348
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|207800640|gb|GD772831.1|GD772831
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|16996607|gb|BM085979.1|BM085979
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|193361734|gb|FK326042.1|FK326042
EST:     ATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: ATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|208294798|gb|GE094771.1|GE094771
EST:     CATATCATTCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGG
genomic: CATATCA-TCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGG
EST: gi|207762109|gb|GD731024.1|GD731024
EST:     CGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: CGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|208135249|gb|GD938320.1|GD938320
EST:     CATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: CATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|298192836|gb|HO033270.1|HO033270
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAGA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|298190608|gb|HO032729.1|HO032729
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAG                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|298191923|gb|HO036005.1|HO036005
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|208128681|gb|GD931411.1|GD931411
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTA
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTA
EST: gi|207795864|gb|GD764103.1|GD764103
EST:     TCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|15201279|gb|BI424787.1|BI424787
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
EST: gi|207812615|gb|GD784521.1|GD784521
EST:     TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAA                         AGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG
genomic: TACGCTCTTTCCGTCAATCTGGGGAAACCATTCCTCCCCATATCATCAAAgtaattcttt ... ttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattcaatattcgcttcttctttgttcatctttttttgtcaatttggttgcagAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGGATCTTGCACAG
                                tttttttgtcaattt  TA-rich tract