Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatttctacatatatatatattaattgattactctggatctctctctttctgatcgatagaatggtggatcgatgaatgcagGTTCAAGATGGCGGAGCAATCGGTTCCGAAGGAAGCGGCGTACCAAATCATAAACGACGAGCTAATGCTAGACGGGAATCCGAGGCTGAACCTGGCGTCG

Basic information

species Glycine max
transcript GLYMA14G39170.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G39170.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0079g00600.t01 (Vitis vinifera), 3'ss of exon 1
------------------------gttcatttctacatatatatatattaattgattactctggatctctctctttctgatcgatagaatgg-------tggatcgatgaatgcagGTTCAAGATGGCGGAGCAATCGGTTCCGAAGGAAGCGGCGTACCAAATCATAAACGACGAGCTAATGCTAGACGGGAATCCGAGGCTGAACCTGGCGTCG
                         |   | |||   | |||||||||   | |||     ||||  | |   | | || |||  |  |||        | |   | ||  ||||||||||||||  ||||| | ||| | |||||||| || |||||||| || |||||||||||||| ||||| || ||||| ||||||||||||||||| || 
gtcattatctacatctctctttctctctctctctctttctatatatatgtttggatccaggtggaaatatacatatatgttcggaattatgaacatatatagggtggtgg-tgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAATAAACGACGAGCTGATGCTGGATGGGAACCCGAGGCTGAACCTGGCTTCA

upper sequence: GLYMA14G39170.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0011g06600.t01 (Vitis vinifera), 3'ss of exon 1
gttcatttctacata-tatatatattaattgattactctggatctctctctttctgatcgatagaatggt-ggatcgatgaatgcagGTTCAAGATGGCGGAGCAATCGGTTCCGAAGGAAGCGGCGTACCAAATCATAAACGACGAGCTAATGCTAGACGGGAATCCGAGGCTGAACCTGGCGTCG
  | |   |  |||| ||| |   ||  ||| || ||     | ||| | |||  |   |   |  || |   ||  | |  |||||||||||| || ||||| | ||| | |||||||| ||||||||||| |||||||||||||| || ||||| || || ||||| ||||| |||||||| |||
-gtaaacccgtcatagtattttgcttttttggtttcttcccctttctttgttttagcaggcaggggtgattaaattaacg--tgcagGTTCAAGTTGCCGGAGAACTCGATCCCGAAGGAGGCGGCGTACCAGATCATAAACGACGAACTGATGCTTGATGGCAATCCTAGGCTAAACCTGGCTTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attactctggatctctctctttctgatcgatagaatggtggatcgatgaatgcagGTTCAAGATGGCGGAGCAATCGGTTCCGAAGGAAGCGGCGTACCAAATCATAAACGACGAGCTAATGCTAGACGGGAATCCGAGGCTGAACCTGGCGTCG
                    ttctgat  putative branch site (score: 3)
                             atagaat  TA-rich tract