Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagttcaataatttttttaggattattatttcacgttaccttttctttttctcactttcttgtttcttaattaacaatccaattcattttatatctctagGTGGTGCAACAATACCGCCATGGCTGGGAATCCGAGGCCGCCGCCGTCGTGGAGGACGTCAAGAACAACCCCGACGCCGCCGTCTCCGGCACCGTCATCC

Basic information

species Glycine max
transcript GLYMA14G38580.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37997757|gb|CF809346.1|CF809346
EST:     ACTGGCGCAAAATGCGCCGCATCATGACCGTCCCCTTCTTCACCAACAAG                         GTGGTGCAACAATACCGCCATGGCTGGGAATCCGAGGCCGCCGCCGTCGTG
genomic: ACTGGCGCAAAATGCGCCGCATCATGACCGTCCCCTTCTTCACCAACAAGgtagtgcaac ... atatctctagGTGGTGCAACAATACCGCCATGGCTGGGAATCCGAGGCCGCCGCCGTCGTG
EST: gi|13252224|gb|BG363127.1|BG363127
EST:     ACTGGCGCAAAATGCGCCGCATCATGACCGTCCCCTTCTTCACCAACAAG                         GTGGTGCAACAATACCGNCATGGCTGGGAATCCGAGGCCGCCGNCGTCGTG
genomic: ACTGGCGCAAAATGCGCCGCATCATGACCGTCCCCTTCTTCACCAACAAGgtagtgcaac ... atatctctagGTGGTGCAACAATACCGCCATGGCTGGGAATCCGAGGCCGCCGCCGTCGTG
EST: gi|6566726|gb|AW234358.1|AW234358
EST:     ACTGGCGCAAAATGCGCCGCATCATGACCGTCCCCTTCTTCACCAACAAG                         GTGGTGCAACAATACCGCCATGGCTGGGAATCCGAGGCCGCCGCCGTCGTG
genomic: ACTGGCGCAAAATGCGCCGCATCATGACCGTCCCCTTCTTCACCAACAAGgtagtgcaac ... atatctctagGTGGTGCAACAATACCGCCATGGCTGGGAATCCGAGGCCGCCGCCGTCGTG
EST: gi|23728055|gb|BU762069.1|BU762069
EST:     ACTGGCGCAAAATGCGCCGCATCATGACCGTCCCCTTCTTCACCAACAAG                         GTGGTGCAACAATACCGCCATGGCTGGGAATCCGAGGCCGCCGCCGTCGTG
genomic: ACTGGCGCAAAATGCGCCGCATCATGACCGTCCCCTTCTTCACCAACAAGgtagtgcaac ... atatctctagGTGGTGCAACAATACCGCCATGGCTGGGAATCCGAGGCCGCCGCCGTCGTG
EST: gi|298190691|gb|HO032812.1|HO032812
EST:     ACTGGCGTAAAATGCGCCGCATCATGACCGTCCCCTTCTTCACCAACAAG                         GTGGTGCAACAATACCGCCATGGCTGGGAATCC
genomic: ACTGGCGCAAAATGCGCCGCATCATGACCGTCCCCTTCTTCACCAACAAGgtagtgcaac ... atatctctagGTGGTGCAACAATACCGCCATGGCTGGGAATCC
EST: gi|254324521|gb|GR833946.1|GR833946
EST:     ACTGGCGCAAAATGCGCCGCATCATGACCGTCCCCTTCTTCACCAACAAG                         GTGGTGCAACAATACCGCCATGGCTGGGAATCCGAGGCCGCCGCCGTCGTG
genomic: ACTGGCGCAAAATGCGCCGCATCATGACCGTCCCCTTCTTCACCAACAAGgtagtgcaac ... atatctctagGTGGTGCAACAATACCGCCATGGCTGGGAATCCGAGGCCGCCGCCGTCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttctcactttcttgtttcttaattaacaatccaattcattttatatctctagGTGGTGCAACAATACCGCCATGGCTGGGAATCCGAGGCCGCCGCCGTCGTGGAGGACGTCAAGAACAACCCCGACGCCGCCGTCTCCGGCACCGTCATCC
                       aattaac  putative branch site (score: 2)
                                              tatctct  putative PPT
                     ttaattaacaatccaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tagttcaataatttttttaggattattatttcacgttaccttttctttttctcactttcttgtttcttaattaacaatccaattcattttatatctctagGTGGTGCAACAATACCGCCATGGCTGGGAATCCGAGGCCGCCGCCGTCGTGGAGGACGTCAAGAACAACCCCGACGCCGCCGTCTCCGGCACCGTCATCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatcca