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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttgattcatacccatttcgccatttcgttcctattattctgggtctctcttagtttttcttattgttgttgttttttggtgtaaaattttcagCTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTTCCACCTAATCACG

Basic information

species Glycine max
transcript GLYMA14G37520.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699104|gb|BW664333.1|BW664333
EST:     TTCTCCCTCACATATCTGGCTCTTGCCCTTCTGGGGATCCTTCCAAAGCT                         CTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTT
genomic: TTCTCCCTCACATATCTGGCTCTTGCCCTTCTGGGGATCCTTCCAAAGCTgtaattttga ... aaattttcagCTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTT
EST: gi|24206326|gb|BU965579.1|BU965579
EST:     TCCCTCACATATCTGGCTCTTGCCCTTCTGGGGATCCTTCCAAAGCT                         CTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTT
genomic: TCCCTCACATATCTGGCTCTTGCCCTTCTGGGGATCCTTCCAAAGCTgtaattttga ... aaattttcagCTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTT
EST: gi|213611801|gb|DB960673.1|DB960673
EST:     TTCTCCCTCACATATCTGGCTCTTGCCCTTCTGGGGATCCTTCCAAAGCT                         CTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTT
genomic: TTCTCCCTCACATATCTGGCTCTTGCCCTTCTGGGGATCCTTCCAAAGCTgtaattttga ... aaattttcagCTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTT
EST: gi|209705600|gb|BW653065.1|BW653065
EST:     TTCTCCCTCACATATCTGGCTCTTGCCCTTCTGGGGATCCTTCCAAAGCT                         CTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTT
genomic: TTCTCCCTCACATATCTGGCTCTTGCCCTTCTGGGGATCCTTCCAAAGCTgtaattttga ... aaattttcagCTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTT
EST: gi|209715729|gb|BW657417.1|BW657417
EST:     TTCTCCCTCACATATCTGGCTCTTGCCCTTCTGGGGATCCTTCCAAAGCT                         CTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTT
genomic: TTCTCCCTCACATATCTGGCTCTTGCCCTTCTGGGGATCCTTCCAAAGCTgtaattttga ... aaattttcagCTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgggtctctcttagtttttcttattgttgttgttttttggtgtaaaattttcagCTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTTCCACCTAATCACG
                                                ttttc  CT-rich tract
           ttagtttttcttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattttgattcatacccatttcgccatttcgttcctattattctgggtctctcttagtttttcttattgttgttgttttttggtgtaaaattttcagCTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTTCCACCTAATCACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT