1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgtagtatctaacattccttcattcaatttttctcttgattttgatgaatgaatcatctgagtggcgcagGATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACCGGAGAAGGTTCTTGAAGTTGCCAGCTCGCACGGCCTCACTCTCAAATTC
species | Glycine max |
transcript | GLYMA14G36610.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: NNNNTGAGAATCCATCACATAGCATGCCTCCAAGACAATTATTCCTATCT GATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACCEST: gi|10847409|gb|BF070096.1|BF070096
genomic: AAAATGAGAATCCATCACATAGCATGCCTCCAAGACAATTATTCCTATCTgtatgtagta ... agtggcgcagGATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACC
EST: CACATAGCATGCCTCCAAGACAATTATTCCTATCT GATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACCEST: gi|4283221|gb|AI440629.1|AI440629
genomic: CACATAGCATGCCTCCAAGACAATTATTCCTATCTgtatgtagta ... agtggcgcagGATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACC
EST: TGAGAATCCATCACATAGCATGCCTCCAAGACAATTATTCCTATCT GATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACCEST: gi|27426743|gb|CA938263.1|CA938263
genomic: TGAGAATCCATCACATAGCATGCCTCCAAGACAATTATTCCTATCTgtatgtagta ... agtggcgcagGATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACC
EST: TGAGAATCCATCACATAGCATGCCTCCAAGACAATTATTCCTATCT GATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACCEST: gi|6567238|gb|AW234849.1|AW234849
genomic: TGAGAATCCATCACATAGCATGCCTCCAAGACAATTATTCCTATCTgtatgtagta ... agtggcgcagGATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACC
EST: NNNNTGAGAATCCATCACATAGCATGCCTCCAAGACAATTATTCCTATCT GATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACCEST: gi|298171455|gb|HO016487.1|HO016487
genomic: AAAATGAGAATCCATCACATAGCATGCCTCCAAGACAATTATTCCTATCTgtatgtagta ... agtggcgcagGATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACC
EST: NNNNTGAGAATCCATCACATAGCATGCCTCCAAGACAATTATTCCTATCT GATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACCEST: gi|298196527|gb|HO041270.1|HO041270
genomic: AAAATGAGAATCCATCACATAGCATGCCTCCAAGACAATTATTCCTATCTgtatgtagta ... agtggcgcagGATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACC
EST: NNNNTGAGAATCCATCACATAGCATGCCTCCAAGACAATTATT-CTATCT GATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACCEST: gi|209706270|gb|BW676285.1|BW676285
genomic: AAAATGAGAATCCATCACATAGCATGCCTCCAAGACAATTATTCCTATCTgtatgtagta ... agtggcgcagGATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACC
EST: NNNNTGAGAATCCATCACATAGCATGCCTCCAAGACAATTATTCCTATCT GATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACC
genomic: AAAATGAGAATCCATCACATAGCATGCCTCCAAGACAATTATTCCTATCTgtatgtagta ... agtggcgcagGATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACC
tccttcattcaatttttctcttgattttgatgaatgaatcatctgagtggcgcagGATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACCGGAGAAGGTTCTTGAAGTTGCCAGCTCGCACGGCCTCACTCTCAAATTC
ttttgat putative branch site (score: 4)
attcaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtagtatctaacattccttcattcaatttttctcttgattttgatgaatgaatcatctgagtggcgcagGATCGTAGACGAGAGCACGAAGGAAGCCGCGGCGGTGGACCCGGTCGAACCGGAGAAGGTTCTTGAAGTTGCCAGCTCGCACGGCCTCACTCTCAAATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC