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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaacatacatttctttttattcattctcttcataacactctgtgcttgcttcgttgttgcagTCCTCTTCGCTCTCCGCTCACGAAAAACACAAATCTCGCGCCGAT

Basic information

species Glycine max
transcript GLYMA14G36280.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396057|gb|EV265934.1|EV265934
EST:     TTCGCAGACTCAACAAACCTTTCTCCAACGCCACTTCCATTTATCGCCAG                         TCCTCTTCGCTCACCGCTCACGAAAAACACAAATCTCGCGCCGAT
genomic: TTCGCAGACTCAACAAACCTTTCTCCAACGCCACTTCCATTTATCGCCAGgtataaacat ... gttgttgcagTCCTCTTCGCTCTCCGCTCACGAAAAACACAAATCTCGCGCCGAT
EST: gi|298187285|gb|HO034434.1|HO034434
EST:     TTCGCAGACTCAACAAACCTTTCTCCAACGCCACTTCCATTTATCGCCAG                         TCCTCTTCGCTCTCCGCTCACGAAAAACACAAATCTCGCGCCGAT
genomic: TTCGCAGACTCAACAAACCTTTCTCCAACGCCACTTCCATTTATCGCCAGgtataaacat ... gttgttgcagTCCTCTTCGCTCTCCGCTCACGAAAAACACAAATCTCGCGCCGAT
EST: gi|209724640|gb|BW651425.1|BW651425
EST:     TTCGCAGACTCAACAAACCTTTCTCCAACGCCACTTCCATTTATCGCCAG                         TCCTCTTCGCTCTCCGCTCACGAAAAACACAAATCTCGCGCCGAT
genomic: TTCGCAGACTCAACAAACCTTTCTCCAACGCCACTTCCATTTATCGCCAGgtataaacat ... gttgttgcagTCCTCTTCGCTCTCCGCTCACGAAAAACACAAATCTCGCGCCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttctttttattcattctcttcataacactctgtgcttgcttcgttgttgcagTCCTCTTCGCTCTCCGCTCACGAAAAACACAAATCTCGCGCCGAT
                      tcataac  putative branch site (score: 2)
                                         cttcgtt  putative PPT
      tttttattcattct  TA-rich tract