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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagtactacccttttctattttcttcttttcttttcttttttccccaattttttttaattgtttttttgtttttctttgtttacttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTAT

Basic information

species Glycine max
transcript GLYMA14G24270.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os02g08520.1 (Oryza sativa), 3'ss of exon 2
gtatgtagtactacccttttctattttcttcttttcttttcttttttccccaattttttttaattgtttttttgtttttctt-tgtttac----ttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTAT
||  ||    |    || |   |||||  |||        | | ||       || ||  | |  |||||   |   || |  |||   |    | |||  ||||| ||||| || || ||| |||||||||||||||||||| | || |||||||| ||||| ||  || | || || ||  | ||||| || || ||||| 
gtgggtgtcccggaactctcggattttgctctagaaccggcgtattgagttgcttgttagttagggttttgggggggttttgatgtgcgccgtgtgtttgcagGTACCAGCGGCTGGTGTTCAGGCACAAACTGTACCAGCTGAGGGAGGAGAGGGACATGAAGCCCCAGGCATTCGCTAGCCTCGTCTCCGCGCTCCTCTAC

upper sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G092975_T01 (Zea mays), 3'ss of exon 2
gtatgtagta-ctacccttttctattttcttcttttcttttcttttttccccaattttttttaattgtttttttgtttttctttgtttacttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTAT
||  || | |  | ||   ||||    || |||   |      | || ||    |||       ||    |||||  |  || ||            ||||| |||||  | || ||| ||||||| ||||| |||||||| || |||||||| ||||| || ||||||||||||||  | |||||||| || ||||| 
gtgagtcgcagttgccgaattctcccctcctctacacacgggctgttgccttcgtttcggcagcttaggattttgggtccctctgc-----------agGTACCAGCGGTTGGTGTTCAGGCACAAGCTGTATCAGCTGCGGGAGGAGAGGGACATGAAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTAC

upper sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G045371_T02 (Zea mays), 3'ss of exon 2
gtatgtagta-ctacccttttctattttcttcttttcttttcttttttccccaattttttttaattgtttttttgtttttctttgtttacttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTAT
||  || | |  | ||   ||||     |       |    | | ||  |     ||    |  ||    ||||   |  ||  |            ||||| |||||  | || ||| ||||||| ||||| |||||||| || |||||||| ||||| || ||||||||||||||  | |||||||| || ||||| 
gtgagtcgcagttgccgaattctccccgcccgcccccacggcctgttctcttcggttcagctgcttagggttttaggtccctccgc-----------agGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTAC

upper sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 2
gtatgtagtactacccttttctattttcttcttttcttttcttttttccccaattttttttaattgtttttttgtttttctttgtttacttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTAT
||||| |  |      |  |||||   |||   ||| ||| ||| ||       |||| ||  | | ||||||       ||   ||    | |  || ||||| || |||||||| |||||||||||||| ||||| || || |||||||||||||| || || |||||||| ||  | || |||||||| || |||
gtatgaatcatcgat-tgctctatcgccttgccttcatttttttgttttg----ttttatttctggattttttaaaaaatttaaattttgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318541|gb|FK011365.1|FK011365
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|151405517|gb|EV275331.1|EV275331
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTTAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|6914510|gb|AW396040.1|AW396040
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|37995705|gb|CF807294.1|CF807294
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|10233865|gb|BE802753.1|BE802753
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|192331116|gb|FK020336.1|FK020336
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|19346754|gb|BM891634.1|BM891634
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|298182182|gb|HO026357.1|HO026357
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|298176982|gb|HO023343.1|HO023343
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|298191795|gb|HO035877.1|HO035877
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|151410578|gb|EV280393.1|EV280393
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|207769518|gb|GD742112.1|GD742112
EST:     CTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: CTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|298198899|gb|HO042262.1|HO042262
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|12774129|gb|BG239056.1|BG239056
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|193678148|gb|FK618398.1|FK618398
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAG
EST: gi|16347157|gb|BI972752.1|BI972752
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|23726885|gb|BU761446.1|BU761446
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|17519828|gb|BM188870.1|BM188870
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|26059647|gb|CA802561.1|CA802561
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|4395893|gb|AI494890.1|AI494890
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|298191024|gb|HO038503.1|HO038503
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|7926292|gb|AW832318.1|AW832318
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|16348147|gb|BI973742.1|BI973742
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
EST: gi|298177393|gb|HO027174.1|HO027174
EST:     GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATT                         GTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG
genomic: GACAAGCTCTTCATCGCTCTCTCTGGCCTCGCCACCGATGCTCAAACATTgtatgtagta ... cttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttccccaattttttttaattgtttttttgtttttctttgtttacttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTAT
              ttttaat  putative branch site (score: 3)
                    ttgtttttttgttttt  CT-rich tract
        aattttttttaattgt  TA-rich tract