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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacagtaatacacaaatcgaatccattatctttttttctctcctctgcgactttttttcgttttccttctctgctaaccatcagatccaccttataattctgaaatatataatatttttttattaataaataattttattttcttttggtgtcgtgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACCGCAAGTACCCGAACGGTTCGCGGCCGAACCGGTCCGCGGGAACCGGGTA

Basic information

species Glycine max
transcript GLYMA14G24220.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g34830.1 (Oryza sativa), 3'ss of exon 1
gtaacagtaatacacaaatcgaatccattatctttttttctctcctctgcgactttttttcgttttccttctctgctaaccatcagatccaccttataattctgaaatatataatatttttttattaataaataattttattttcttttggtgtcgtgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACCGCAAGTACCCGAACGGTTCGCGGCCGAACCGGTCCGCGGGAACCGGGTA
                                                                                | ||   |||| ||      ||    ||  ||   |  || |   || |       || ||      |   || |     |||||||||||||  ||||||| ||||| |||||||| || ||| | ||  |||||||||||||||||||||| ||||||||||||||  |||| ||  |||||||
-----------------------------------------------------------------------------gtacgtctcttccatctccctcctcc---atccatgcaaacttatagctactg------ttcatcgatcgtccatgactc--catgcagGAATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCTCGGGACCGCAAGTACCCGAACGGGTCGCGGCCGAACCGCGCCGCCGGGTCCGGGTA

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g34830.2 (Oryza sativa), 3'ss of exon 1
gtaacagtaatacacaaatcgaatccattatctttttttctctcctctgcgactttttttcgttttccttctctgctaaccatcagatccaccttataattctgaaatatataatatttttttattaataaataattttattttcttttggtgtcgtgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACCGCAAGTACCCGAACGGTTCGCGGCCGAACCGGTCCGCGGGAACCGGGTA
                                                                |||  ||  ||  | |   ||  | |  ||  |   |||      |  | |   |    | | |||  || | ||  |   |  |    |      |||||||||||||  ||||||| ||||| |||||||| || ||| | ||  |||||||||||||||||||||| ||||||||||||||  |||| ||  |||||||
---------------------------------------------------------------gttcgatccatggcatctcccaagtacgtctcttccatctccctcctcca-tccatgcaaacttatagctactgttcatcgatcgtc-catgactccatgcagGAATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCTCGGGACCGCAAGTACCCGAACGGGTCGCGGCCGAACCGCGCCGCCGGGTCCGGGTA

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g66120.1 (Oryza sativa), 3'ss of exon 1
gtaacagtaatacacaaatcgaatccattatctttttttctctcctctgcgactttttttcgttttccttctctgctaaccatcagatccaccttataattctgaaatatataatatttttttattaataaataattttattttcttttggtgtcgtgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACCGCAAGTACCCGAACGGTTCGCGGCCGAACCGGTCCGCGGGAACCGGGTA
                                               | |||   |  | |   | | | |||  | || |||||   ||||| |  ||  | |             |  |  ||| ||  ||   |||  |||  |||| ||  ||||| || ||| |||||  ||||||||||||| |||||||| || ||| | ||| | |||||||||||||||||||| ||||||||||||||  |||| ||  | |||||
----------------------------------------------gtacgataatcctcctcctccatcctc--ccaatcatca---ccaccat-caacgccg-------------tcgtgaattgattgattgatttggtttgatttgttg--gtgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACCGCAAGTACCCGAACGGGTCGCGGCCGAACCGCGCCGCCGGGTCGGGGTA

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os11g08210.1 (Oryza sativa), 3'ss of exon 1
gtaacagtaatacacaaatcgaatccattatctttttttctctcctctgcgactttttttcgttttccttctctgctaaccatcagatccaccttataattctgaaatatataatatttttttattaataaataattttattttcttttggtgtcgtgttat-gcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACCGCAAGTACCCGAACGGTTCGCGGCCGAACCGGTCCGCGGGAACCGGGTA
                                                                            ||| ||  ||    | |  ||      |||      ||    ||    |  |     ||||  |||   |   | | | |  || | ||||  | |||  ||   || ||||| |||||||| || ||| ||||| ||||||| ||||||||||||||   |||||||||| || | ||||| || |||||
---------------------------------------------------------------------------gtaagcaagagcaaaagcagatcgaatcgaatcgaggaaa---ttgaagtcgaattcaaattcaattaattggggatttggaattgttgcagAGAGGGCGATGGGAGGGGAGAAGGAGTGGTACTTCTTCTCGCCGCGGGACCGGAAGTACCCGAACGGGCAGCGGCCGAACAGGGCGGCGGGGACGGGGTA

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G180328_T01 (Zea mays), 3'ss of exon 1
gtaacagtaatacacaaatcgaatccattatctttttttctctcctctgcgactttttttcgttttccttctctgctaaccatcagatccaccttataattctgaaatatataatatttttttattaataaataattttattttcttttggtgtcgtgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACCGCAAGTACCCGAACGGTTCGCGGCCGAACCGGTCCGCGGGAACCGGGTA
                                                |    | |  | ||    |  ||   || |  | |     |    || | |    |   | ||        |  |  | |    | || |   |  ||  || ||||    | |||||| |||||  ||||||| ||||| |||||||| || ||| | ||| |||||||||||||||||||||| ||||||||||||||  |||| ||  |||||||
------------------------------------------------gtacgtgtcgtccgccgccgctccacgc-agtcgttgttccaggtttcttagctcgccctgtac------ctgctgctgactcctgatctcggta-ctactgctgtc----tgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACCGCAAGTACCCGAACGGGTCGCGGCCGAACCGCGCCGCCGGCGCCGGGTA

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G014653_T03 (Zea mays), 3'ss of exon 1
gtaacagtaatacacaaatcgaatccattatctttttttctctcctctgcgactttttttcgttttccttctctgctaaccatcagatccaccttataattctgaaatatataatatttttttattaataaataattttattttcttttggtgtcgtgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACCGCAAGTACCCGAACGGTTCGCGGCCGAACCGGTCCGCGGGAACCGGGTA
                                                   || |    ||||  ||  |||      | || |||   || |   | |  |       | |       |     |    |   | |  ||    |  |       |||  |||||| |||||  ||||||| ||||| |||||||| || ||| | ||| |||||||||||||||||||||| ||  |||| |||||  |||| ||  | |||||
-------------------------------------------------gtacgtcccgtcgtcctcggtcttcttgcagcagcagtagcagcc-gtgaaccaatttcctgtgcggccgtgacgatggcgagctaatcgatcgattgctaactctctgt-gtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACCGCAAGTACCCGAACGGGTCCAGGCCCAACCGCGCCGCCGGGGCTGGGTA

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0001g02300.t01 (Vitis vinifera), 3'ss of exon 1
gtaacagtaatacacaaatcgaatccattatctttttttctctcctctgcgactttttttcgttttccttctctgctaaccatcagatccaccttataattctgaaatatataatatttttttattaataaataattttattttcttttggtgtcgtgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACCGCAAGTACCCGAACGGTTCGCGGCCGAACCGGTCCGCGGGAACCGGGTA
                                                |  | | || ||  |||   || | || ||    |           |  | | |  |||| |  |     |||||||| |      ||||           ||||     ||   |||  ||||| ||||||||||||||||||||||| || ||  ||||||| || || || || |||||||||||  ||||||||||| | |||||||| |||||
------------------------------------------------gtaattattattattttcatttttttgttatttttt--------tctgaactcccaaaatttgga-----tttttatttaagggggattt-----------ggtgat---ttgaacagAGATGGCCTTGTACGGAGAGAAAGAGTGGTACTTCTTTTCGCCGAGAGATCGGAAATATCCGAACGGTTCAAGGCCGAACCGGGCAGCGGGAACAGGGTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57575399|gb|CX548374.1|CX548374
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACTTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|11413801|gb|BF425812.1|BF425812
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTANNNNNNNCACGCCGAGGGAC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTT-CACGCCGAGGGAC
EST: gi|254319629|gb|GR830761.1|GR830761
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|20811782|gb|BQ296260.1|BQ296260
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|11274388|gb|BF324741.1|BF324741
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTNGGGACCTTNCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|15664353|gb|BI701724.1|BI701724
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|11413028|gb|BF425048.1|BF425048
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|120534378|gb|EH262511.1|EH262511
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTANNNNNNNCACGCCGAGGGAC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTA-TTTTTTCACGCCGAGGGAC
EST: gi|120534166|gb|EH262299.1|EH262299
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTANNNNNNNCACGCCGAGGGAC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTA-TTTTTTCACGCCGAGGGAC
EST: gi|254322249|gb|GR837663.1|GR837663
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|213617798|gb|DB959382.1|DB959382
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|298163534|gb|HO012267.1|HO012267
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|254320223|gb|GR829411.1|GR829411
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|213620404|gb|DB957301.1|DB957301
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|254314647|gb|GR829640.1|GR829640
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|213607698|gb|DB958717.1|DB958717
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|16106046|gb|BI893786.1|BI893786
EST:     ATAATCGCCGAATTTGTATTTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTCTGCACGGACAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: ATAATCGCCGAAATTG-ATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|10847622|gb|BF071581.1|BF071581
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|213599829|gb|DB973887.1|DB973887
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|254343687|gb|GR857443.1|GR857443
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|10847892|gb|BF071632.1|BF071632
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatatttttttattaataaataattttattttcttttggtgtcgtgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACCGCAAGTACCCGAACGGTTCGCGGCCGAACCGGTCCGCGGGAACCGGGTA
           tattaat  putative branch site (score: 2)
     tttttttattaataaa  TA-rich tract