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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcctggaatccctttccatgatataatataatgatgactgcgtacaatatttttaactgcttggttcatgttcattgtatttttaataaaatgtattctttttatccaaacaatataacagttattattatggtcttttctgtctattctagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCGTGTACTGGCTAAGCACGAATCTATTTCTTCTGGAACTTCTACCAAAAAT

Basic information

species Glycine max
transcript GLYMA14G21360.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G21360.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0008g03720.t01 (Vitis vinifera), 3'ss of exon 7
gtaaggcctggaatccctttccatgatataatataatgatgactgcgtacaatatttttaactgcttggttcatgttcattgtatttttaataaaatgtattctttttatccaaacaatataacagttattattatggtcttttctgtctattctagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCGTGTACTGGCTAAGCACGAATCTATTTCTTCTGGAACTTCTACCAAAAAT
                                               |||||     |||| |     ||| |   |   | | ||||| | |   |  |   || | ||       ||       || ||  | |  | | ||||  || ||  ||||||||||| || ||||| |||||||| || |||||||||||  | |||||  |||| || || |||||| ||||| |||| |||||| ||     ||| 
---------------------------------------------tttacaa----attaaatcagaagttgagaatttctatgtttttga-agtttaaacagttgtcattggggttat-------tttttcattttttatcttcttactctttcagGGATGAATCGCTTCTATGTCAAGGACTGGCACTGAATGATGACTTGCAGCGATTACTAGCCAAACACGAAGCTATTGCTTCAGGAACTCCTGTTCCAAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208113046|gb|GD912435.1|GD912435
EST:     CTTGTCAACTCAACTTT                         GGATGAATCACCGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCG
genomic: CTTGTCAACTCAACTTTgtaaggcctg ... tctattctagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttatccaaacaatataacagttattattatggtcttttctgtctattctagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCGTGTACTGGCTAAGCACGAATCTATTTCTTCTGGAACTTCTACCAAAAAT
               atataac  putative branch site (score: 3)
                                    tcttttctgtctattc  putative PPT
          aaacaatataacagtt  TA-rich tract