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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctctcctcttctctcagttacgcaaagttctttcatcgtcaaatttttaattttcaattacttaataaattagctgtatcttccttttttttatgtagTTCTGTTGGTGATGTTCAATAAAGCAGCGCTTTCGTCTTATAACTTTCCGTCCGCTAATGTCATCACACTTCTTCAG

Basic information

species Glycine max
transcript GLYMA14G14360.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G14360.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S123_60V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaacctctcctcttctctcagttacgcaaagttctttcatcgtcaaatttttaattttcaattacttaataaattagctgtat---cttccttttttttat-gtagTTCTGTTGGTGATGTTCAATAAAGCAGCGCTTTCGTCTTATAACTTTCCGTCCGCTAATGTCATCACACTTCTTCAG
        | |     |  ||| |   |  | |  | | |  |  |    || | | |    |   ||| ||| ||    |  |   |  |||   ||  || | |||||| |||||||||||||| ||||||||| | |||  |||||| ||||| |  || |||||||||||| |  | |||
-------gttcagagttaccagctggacttaatcttataagtggaattggttcagtctgtgttgtattagtaacttcatagcgtggacgccctgagttggattgcagTTCTATTGGTGATGTTCAACAAAGCAGCGTTGTCGAGTTATAAATTTCCTTGTGCAAATGTCATCACAGTAATGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttaattttcaattacttaataaattagctgtatcttccttttttttatgtagTTCTGTTGGTGATGTTCAATAAAGCAGCGCTTTCGTCTTATAACTTTCCGTCCGCTAATGTCATCACACTTCTTCAG
                              ctgtatcttccttttt  CT-rich tract
     aattttcaattactta  TA-rich tract