Sequence
atgc intronic sequence ATGC exonic sequence...tggatagaataaaaatatttacacttatagtgtatgaaaatcaaactcttgtgtttatgcaatcttcacaaaaatatatttttccttctcgcatgtgtagGTTGAGATATTATGCAGCATAAGGCATCCTAACATGGTCCTCCTCCTTGGTGCGTGTCCCGAGTACGGATGCCTAGTGTATGAGTACTTGGAGAATGGTA
Basic information
species | Glycine max |
transcript | GLYMA14G12790.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G12790.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G26150.1 (Arabidopsis thaliana), 3'ss of exon 6
tggatagaataaaaatatttacacttatagtgtatgaaaatcaaactcttgtgtttatgcaatcttcacaaaaatatatttttccttctcgcatgtgtagGTTGAGATATTATGCAGCATAAGGCATCCTAACATGGTCCTCCTCCTTGGTGCGTGTCCCGAGTACGGATGCCTAGTGTATGAGTACTTGGAGAATGGTA
| | | | ||| | | | | |||| ||||||| | || ||| || ||| | | | ||||||||| | |||| ||||||||||||| ||||||| || ||||||||||| ||||| || || ||||| | || || |||| | |||| ||||| |
-----------------------gtaagattttatctattttcta-ttttgt-tttatgcttttgcgtaaatcatacatatttttgttcttattttatagGTTGAGGTTCTATGTTCCATAAGGCATCCTCACATGGTTCTTCTCCTTGGTGCATGTCCTGAATATGGATGTTTGGTTTACGAGTTCATGGAAAATGGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcttgtgtttatgcaatcttcacaaaaatatatttttccttctcgcatgtgtagGTTGAGATATTATGCAGCATAAGGCATCCTAACATGGTCCTCCTCCTTGGTGCGTGTCCCGAGTACGGATGCCTAGTGTATGAGTACTTGGAGAATGGTA
tatttttccttctcgc CT-rich tract
aatcttcacaaaaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggatagaataaaaatatttacacttatagtgtatgaaaatcaaactcttgtgtttatgcaatcttcacaaaaatatatttttccttctcgcatgtgtagGTTGAGATATTATGCAGCATAAGGCATCCTAACATGGTCCTCCTCCTTGGTGCGTGTCCCGAGTACGGATGCCTAGTGTATGAGTACTTGGAGAATGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - aaaaata
- - - - - - - - - - - - - - - tgtatga
- - - - - - - - - - - - - - - - - - - - - - - tcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaa