Sequence
atgc intronic sequence ATGC exonic sequence...agtcgatcacttacttaatgttttacattgatcattgacttggactaatttgaccagtctttgtcttcttgccttttttgttgtgtggaaatgtacacagGGGTTTAGGAAAGTTGATCCTGATAGATGGGAATTTGCAAACGAAGGTTTTTTGGCAGGACAAAGGCACTTATTGAAGACCATTAAGAGAAGAAGAAATG
Basic information
species | Glycine max |
transcript | GLYMA14G11030.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G11030.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0008g01110.t01 (Vitis vinifera), 3'ss of exon 1
---agtcgatcacttacttaatgttttacattgatcattgacttggactaatttgaccagtctttgtcttcttgccttttttgttgtgtggaaatgtacacagGGGTTTAGGAAAGTTGATCCTGATAGATGGGAATTTGCAAACGAAGGTTTTTTGGCAGGACAAAGGCACTTATTGAAGACCATTAAGAGAAGAAGAAATG
| || | || | | | || ||| | || | | ||| | | | || | | || || || || || || || | ||||| ||||| ||||| ||||| ||| ||||||| |||||||| ||||| ||||||| ||| || | ||| | |||||| ||| |||||||||||| |||
ttgattctagtttatattgagttaatttgattttttttttataagtttcaatctttactgctttgattctgatgggctt--tgatgcttgcaa-tggatgcagGGTTTTAGAAAAGTCGATCCAGATCGATGGGAGTTTGCAAATGAAGGGTTTTTGGGAGGGCAGAAGCATCTGCTGAAGAACATCAAGAGAAGAAGACATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatttgaccagtctttgtcttcttgccttttttgttgtgtggaaatgtacacagGGGTTTAGGAAAGTTGATCCTGATAGATGGGAATTTGCAAACGAAGGTTTTTTGGCAGGACAAAGGCACTTATTGAAGACCATTAAGAGAAGAAGAAATG
ttttttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtcgatcacttacttaatgttttacattgatcattgacttggactaatttgaccagtctttgtcttcttgccttttttgttgtgtggaaatgtacacagGGGTTTAGGAAAGTTGATCCTGATAGATGGGAATTTGCAAACGAAGGTTTTTTGGCAGGACAAAGGCACTTATTGAAGACCATTAAGAGAAGAAGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - -cacttac
- - - - - - - - - - - - - - - - - -tgacttg