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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgattatgtggctaattttgcacaatcctagttgacatatttgatctatattttacattcctttaatgttttcagttacttttataatttaattttatagGTTGCAAGACGACAGATTAAAAGTGTGTTTGCTACAAGCTATTTTTCTGTCAATAAGCTTGGAGATCGTGCAG

Basic information

species Glycine max
transcript GLYMA14G10950.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10843998|gb|BF067344.1|BF067344
EST:     TAGCTCGATCTCGTGAGCATGGCTTTGCGGCTTTGGGTATCGCAG                         GTTGCAAGACGACAGATTAAAAGTGTGTTTGCTACAAGCTATTTTTCTGTC
genomic: TAGCTCGATCTCGTGAGCATGGCTTTGCGGCTTTTGGTATCGCGGgtaagttgat ... aattttatagGTTGCAAGACGACAGATTAAAAGTGTGTTTGCTACAAGCTATTTTTCTGTC
EST: gi|208104142|gb|GD902705.1|GD902705
EST:     TGAGATAGCTCGATCTCGTGAGCATGGCTTTGCGGCTTTTGGTATCGCGG                         GTTGCAAGACGACAGATTAAAAGTGTGTTTGCTACAAGCTATTTTTCTGTC
genomic: TGAGATAGCTCGATCTCGTGAGCATGGCTTTGCGGCTTTTGGTATCGCGGgtaagttgat ... aattttatagGTTGCAAGACGACAGATTAAAAGTGTGTTTGCTACAAGCTATTTTTCTGTC
EST: gi|209714046|gb|BW684499.1|BW684499
EST:     TGAGATAGCTCGATCTCGTGAGCATGGCTTTGCGGCTTTTGGTATCGCGG                         GTTGCAAGACGACAGATTAAAAGTGTGTTTGCTACAAGCTATTTTTCTGTC
genomic: TGAGATAGCTCGATCTCGTGAGCATGGCTTTGCGGCTTTTGGTATCGCGGgtaagttgat ... aattttatagGTTGCAAGACGACAGATTAAAAGTGTGTTTGCTACAAGCTATTTTTCTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatattttacattcctttaatgttttcagttacttttataatttaattttatagGTTGCAAGACGACAGATTAAAAGTGTGTTTGCTACAAGCTATTTTTCTGTCAATAAGCTTGGAGATCGTGCAG
                                         atttaat  putative branch site (score: 4)
                tttaatgttttcagtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgattatgtggctaattttgcacaatcctagttgacatatttgatctatattttacattcctttaatgttttcagttacttttataatttaattttatagGTTGCAAGACGACAGATTAAAAGTGTGTTTGCTACAAGCTATTTTTCTGTCAATAAGCTTGGAGATCGTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - -gtggcta
- - - - - - - - - tgcacaa