1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acccttaatttgacttttaaggtttgtgattggatcatcgtgtaagtgcaatagattatttatttattggtgtgtgtgtgtgtgtgtgtgtggtgtatagGTTTGGAGAATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCTTCTGTCCGTGCCAAACAAGTAGGGTTCTGCAGCATTCCAATGATTGGGGCAGTGAAAA
species | Glycine max |
transcript | GLYMA14G07830.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGATTCTTTGTGGCGGTGTTCGATCGGTACCTGCATCTCTTCTTTTCCAG GTTTGGAGAATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCTTCTGTCCGTEST: gi|9986806|gb|BE660914.1|BE660914
genomic: TGATTCTTTGTGGCGGTGTTCGATCGGTACCTGCATCTCTTCTTTTCCAGgtctgaatct ... tggtgtatagGTTTGGAGAATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCTTCTGTCCGT
EST: TGATTCTTTGTGGCGGTGTTCGATCGGTACCTGCATCTCTTCTTTTCCAG GTTTGGAGAATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCTTCTGTCCGTEST: gi|9565053|gb|BE474562.1|BE474562
genomic: TGATTCTTTGTGGCGGTGTTCGATCGGTACCTGCATCTCTTCTTTTCCAGgtctgaatct ... tggtgtatagGTTTGGAGAATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCTTCTGTCCGT
EST: TGATTCTTTGTGGCGGTGTTCGATCGGTACCTGCATCTCTTCTTTTCCAG GTTTGGAGAATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCTTCTGTCCGTEST: gi|151397283|gb|EV267156.1|EV267156
genomic: TGATTCTTTGTGGCGGTGTTCGATCGGTACCTGCATCTCTTCTTTTCCAGgtctgaatct ... tggtgtatagGTTTGGAGAATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCTTCTGTCCGT
EST: TGATTCTTTGTGGCGGTGTTCGATCGGTACCTGCATCTCTTCTTTTCCAG GTTTGGAGAATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCTTCTGTCCGT
genomic: TGATTCTTTGTGGCGGTGTTCGATCGGTACCTGCATCTCTTCTTTTCCAGgtctgaatct ... tggtgtatagGTTTGGAGAATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCTTCTGTCCGT
gtgcaatagattatttatttattggtgtgtgtgtgtgtgtgtgtgtggtgtatagGTTTGGAGAATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCTTCTGTCCGTGCCAAACAAGTAGGGTTCTGCAGCATTCCAATGATTGGGGCAGTGAAAA
atagattatttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccttaatttgacttttaaggtttgtgattggatcatcgtgtaagtgcaatagattatttatttattggtgtgtgtgtgtgtgtgtgtgtggtgtatagGTTTGGAGAATGAGTTCTGTGCAAGGACCAGTTGTGTGCCCTTCTGTCCGTGCCAAACAAGTAGGGTTCTGCAGCATTCCAATGATTGGGGCAGTGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
-cccttaa
- - - - - - - - - - -gtttgtg
- - - - - - - - - - - - - - - - - - - - - - agtgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgtg