1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aagcttaagccaatgttttgtggttaatgatagagcatagatagtgatctaatgtgtttctgattgctttttcttatgatgtggtgtttttgctttatagCAACGTAATCTTTTCCTTTGATCTTACGTGCTTTCTATTTTATTAATCTTTTCCTTTATCTTCAATAACCTTTTCCTCCCTTTTGGATCATTTTTATTCA
species | Glycine max |
transcript | GLYMA14G07710.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gatctaatgtgtttctgattgctttttcttatgatgtggtgtttttgctttatagCAACGTAATCTTTTCCTTTGATCTTACGTGCTTTCTATTTTATTAATCTTTTCCTTTATCTTCAATAACCTTTTCCTCCCTTTTGGATCATTTTTATTCA
ttctgat putative branch site (score: 3)
tttttgcttt putative PPT
tttttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcttaagccaatgttttgtggttaatgatagagcatagatagtgatctaatgtgtttctgattgctttttcttatgatgtggtgtttttgctttatagCAACGTAATCTTTTCCTTTGATCTTACGTGCTTTCTATTTTATTAATCTTTTCCTTTATCTTCAATAACCTTTTCCTCCCTTTTGGATCATTTTTATTCA
- - - - -ccaatgt
- - - - - - - - - tgtggtt
- - - - - - - - - - - - - - - - - - - -gatagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggtg