1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtacgtatttggttcctttatctctctattcgcttgttttcttttaccattttatttgtataaagcattcaccattgctcacgtgcacgtccttaatcagAATCGGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGG
species | Glycine max |
transcript | GLYMA14G07160.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGAATGATGTTTGCGGCGGTGGCTGTGGATTCGCTATTGCTATATCTG AATCGGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCTEST: gi|15285417|gb|BI469308.1|BI469308
genomic: TTGGAATGATGTTTGCGGCGGTGGCTGTGGATTCGCTATTGCTATATCTGgtgtgtcact ... ccttaatcagAATCGGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCT
EST: TTGGAATGATGTTTGCGGCGGTGGCTGTGGATTCGCTATTGCTATATCTG AATCGGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCTEST: gi|192326275|gb|FK017622.1|FK017622
genomic: TTGGAATGATGTTTGCGGCGGTGGCTGTGGATTCGCTATTGCTATATCTGgtgtgtcact ... ccttaatcagAATCGGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCT
EST: TTGGAATGATGTTTGCGGCGGTGGCTGTGGATTCGCTGTTGCTATATCTG AATCGGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCT
genomic: TTGGAATGATGTTTGCGGCGGTGGCTGTGGATTCGCTATTGCTATATCTGgtgtgtcact ... ccttaatcagAATCGGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCT
accattttatttgtataaagcattcaccattgctcacgtgcacgtccttaatcagAATCGGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGG
tgctcac putative branch site (score: 2)
cgtcctt putative PPT
tttatttgtataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtatttggttcctttatctctctattcgcttgttttcttttaccattttatttgtataaagcattcaccattgctcacgtgcacgtccttaatcagAATCGGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - -tggttcc
- - - - - - - - - - - - - - - -gcttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcacgt