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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgttgttgttgttgaattgtttgttagtttttctatttagcattgcctgtagtgttattttatggcatggttgagatctctctctcttcgctttttcagGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAATATGGGGGTTTGCCTCCTACTGCCAATTATCTCTTTTTGGGGGACTATGTGGACCG

Basic information

species Glycine max
transcript GLYMA14G07080.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07080.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G160237_T02 (Zea mays), 3'ss of exon 2
ctgttgttgttgttgaattgtttgttagtttttctatttagcattgcctgtagtgttattttatggcat--ggttgagatctct-ctctcttcgctttttcagGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAATATGGGGGTTTGCCTCCTACTGCCAATTATCTCTTTTTGGGGGACTATGTGGACCG
 |  | || ||  |||        || |  | |  |||  |  |    |||    | |||  || | ||     ||  |||||  || || |    | | |||||||||| ||||| || ||||||||| |  ||||||| ||||||||||| || || ||||||   ||||||||||| || || || || ||||| || ||
tttctatttttactgatgaaagctttggactgtg-attgtgtgtcctttgt--cttcattgaatagtatctaagtgcaatctccactgtcatttggtatccagGTGACATCCATGGTCAATACAGTGATCTTCTAAGGCTTTTTGAATATGGAGGCTTTCCTCCTGAAGCCAATTATCTATTCTTAGGTGATTATGTTGATCG

upper sequence: GLYMA14G07080.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G39840.1 (Arabidopsis thaliana), 3'ss of exon 1
----ctgttgttgttgttgaattgtttgttagtttttctatttagcattg-cctgtagtgttattttatggcatggttgagatctctctctcttcgctttttcagGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAATATGGGGGTTTGCCTCCTACTGCCAATTATCTCTTTTTGGGGGACTATGTGGACCG
    ||  | |||||| | |      |||  || ||  |    |    |  || ||  ||| ||||  |     | ||| | | |   | ||||        |||||||||| |||||||| || ||||||||||| ||||||||||| ||||| || || ||||||| |||||||||||| ||| | ||||||||||||||| |
gaggcttatcttgttgcttatgatactgtgtgtgttcatgaaaaatcctatcccgttctgtgatttccttatg-gtttgtggtgtacatgtcttaaac----cagGTGACATACATGGGCAATATAGTGATTTGTTGAGGCTATTTGAGTATGGTGGCTTCCCTCCTAGTGCCAATTATCTATTTCTTGGGGACTATGTGGACAG

upper sequence: GLYMA14G07080.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0019g02410.t01 (Vitis vinifera), 3'ss of exon 1
-------ctgttgttgttgttgaattgtttgttagtttttctatttagcattgcctgtagtgttattttatggcatggttgagatctctctctcttcgctttttcagGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAATATGGGGGTTTGCCTCCTACTGCCAATTATCTCTTTTTGGGGGACTATGTGGACCG
        ||    | ||||   ||   || || |  |||||  | |  |||  ||| | || | |||| ||   | ||  |      |  | ||| |   |||||||||| ||||||||||| |||||||| ||||||||||| |||||||| ||||| || ||||||    |||||||||| ||||| |||||||||||||| ||
atgtaggatggaaat-ttgtcatatatattttttgagtttcttgtgataattatctggattgat-ttttctgatcttgtaaa-----tttgcccttggtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGGGGTTTCCTCCTCACACCAATTATCTATTTTTAGGGGACTATGTGGATCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208267846|gb|GE071221.1|GE071221
EST:     CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTG                         GTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGG
genomic: CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttt ... gctttttcagGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAATATGGGG
EST: gi|192320634|gb|FK012716.1|FK012716
EST:     CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTG                         GTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAATATGGGG
genomic: CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttt ... gctttttcagGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAATATGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctgtagtgttattttatggcatggttgagatctctctctcttcgctttttcagGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAATATGGGGGTTTGCCTCCTACTGCCAATTATCTCTTTTTGGGGGACTATGTGGACCG
                                tctctctctcttcgct  CT-rich tract
     tagtgttattttat  TA-rich tract