Sequence
atgc intronic sequence ATGC exonic sequence...atgctatatgttctattatcatttaattgactgattagcagtcattacgaatataatgactgtcaattatcaatatctaatgagaattcaatttctgcagAGGAAGAGGATAGCATCATAGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAGCAATTGCTAGGCTTCTTCCAGGAAGAACAGATAATGCAATCAA
Basic information
species | Glycine max |
transcript | GLYMA14G06870.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G06870.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0019g03200.t01 (Vitis vinifera), 3'ss of exon 1
-----atgctatatgttctattatcatttaattgactgattagcagtcattacgaatataatgactgtcaattatcaatatctaatgagaattcaatttctgcagAGGAAGAGGATAGCATCATAGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAGCAATTGCTAGGCTTCTTCCAGGAAGAACAGATAATGCAATCAA
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atgttcttgtgtatgtaccatgtcaatggaactg---gactcacatccatgtttacttgttttttcgttagttaata-taaacgatgcatcctttgtg-ctgcagAGGAAGAGGATCGTATTATAATTGCAGCCCATTCACATCATGGAAATAAGTGGGCATCAATTGCAAGGCTCCTGCCAGGCAGAACAGACAATGCAATCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18730415|gb|BM525863.1|BM525863EST: CCGGTGGTGTAATCAGCTGGACCCTTGCGTGAAACGCAAGCCCTTCACTG AGGAAGAGGATAGCATCATAGTTTCAGCCCATGCAATCCATGGAAACAAAT
genomic: CCGGTGGTGTAATCAGCTGGACCCTTGCGTGAAACGCAAGCCCTTCACTGgtaattaatt ... atttctgcagAGGAAGAGGATAGCATCATAGTTTCAGCCCATGCAATCCATGGAAACAAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacgaatataatgactgtcaattatcaatatctaatgagaattcaatttctgcagAGGAAGAGGATAGCATCATAGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAGCAATTGCTAGGCTTCTTCCAGGAAGAACAGATAATGCAATCAA
atctaat putative branch site (score: 3)
tttctgc putative PPT
aattatcaatatctaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgctatatgttctattatcatttaattgactgattagcagtcattacgaatataatgactgtcaattatcaatatctaatgagaattcaatttctgcagAGGAAGAGGATAGCATCATAGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAGCAATTGCTAGGCTTCTTCCAGGAAGAACAGATAATGCAATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
-tgctata
- - - - - - - - - - - - - ttgactg
- - - - - - - - - - - - - - - - - - -gcagtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgtca