1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagatatttatctttcactttgccaactggggtggttttcaattcatgtagcagctgaggttatattgtaaaggtctaattaagaagctacattgtattggtttgggcatttggaattggtggtggtagGTTTGGTGCACTTAGATCTAAAAGCTAGAAAGATGTCTTTTATTGGCACTCAACAAAAGTGCGAGGCTTGTGACAAAACAGTGTACCCCGTTGATCAGCT
species | Glycine max |
transcript | GLYMA14G06800.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAATTTGACTCGATATGTTGAAGTTTCTCTGCAGCTAAATTGACCAATC GTTTGGTGCACTTAGATCTAAAAGCTAGAAAGATGTC-TTTATTGGCACTCEST: gi|193564999|gb|FK519708.1|FK519708
genomic: ACAATTTGACTCGATATGTTGAAGTTTCTCTGCAGCTAAATTGACCAATCgtaagatatt ... gtggtggtagGTTTGGTGCACTTAGATCTAAAAGCTAGAAAGATGTCTTTTATTGGCACTC
EST: TCTGCAGCTAAATTGACCAATC GTTTGGTGCACTTAGATCTAAAAGCTAGAAAGATGTCTTTTATTGGCACTC
genomic: TCTGCAGCTAAATTGACCAATCgtaagatatt ... gtggtggtagGTTTGGTGCACTTAGATCTAAAAGCTAGAAAGATGTCTTTTATTGGCACTC
tctaattaagaagctacattgtattggtttgggcatttggaattggtggtggtagGTTTGGTGCACTTAGATCTAAAAGCTAGAAAGATGTCTTTTATTGGCACTCAACAAAAGTGCGAGGCTTGTGACAAAACAGTGTACCCCGTTGATCAGCT
gtctaat putative branch site (score: 3)
attgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatatttatctttcactttgccaactggggtggttttcaattcatgtagcagctgaggttatattgtaaaggtctaattaagaagctacattgtattggtttgggcatttggaattggtggtggtagGTTTGGTGCACTTAGATCTAAAAGCTAGAAAGATGTCTTTTATTGGCACTCAACAAAAGTGCGAGGCTTGTGACAAAACAGTGTACCCCGTTGATCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT