1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcctgcacactctttcgcctacattcaatttttacactccttacccttatttttttattcttgatttgtttctacgattttattttatggatgatgtttacgtgcagaagtccgttatttctgtttttggagtttacttaattttttatttgttttttcacagGTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAGGTGAACCCAAAGGAAGTTATAGTTGGGTG
species | Glycine max |
transcript | GLYMA14G06690.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGATGTCCGCAATTCTTACGCCGTTCCGCACAGCGGGTCCGTCGACCAG GTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAGEST: gi|254338950|gb|GR847667.1|GR847667
genomic: TCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgtcctgcaca ... tttttcacagGTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAG
EST: TCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAG GTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAGEST: gi|192324171|gb|FK017902.1|FK017902
genomic: TCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgtcctgcaca ... tttttcacagGTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAG
EST: TCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAG GTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAGEST: gi|298171514|gb|HO016546.1|HO016546
genomic: TCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgtcctgcaca ... tttttcacagGTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAG
EST: TCGATGTCCGCAATTCTTACGCCGTTCCGCACAGCGAGTCCGTCGACCAG GTCGCTTTGGATATTGGGTATCACCATAGTATGTTATTATCCCACCAGAAG
genomic: TCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgtcctgcaca ... tttttcacagGTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAG
agtccgttatttctgtttttggagtttacttaattttttatttgttttttcacagGTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAGGTGAACCCAAAGGAAGTTATAGTTGGGTG
acttaat putative branch site (score: 4)
ttttttatttgttttt CT-rich tract
tttttggagtttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcctgcacactctttcgcctacattcaatttttacactccttacccttatttttttattcttgatttgtttctacgattttattttatggatgatgtttacgtgcagaagtccgttatttctgtttttggagtttacttaattttttatttgttttttcacagGTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAGGTGAACCCAAAGGAAGTTATAGTTGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA