1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaactagcgttttgtatatgatttgttctttagacttgctgtttagattttttttattttgtgcttgagctttaaacttttgtgcttatgattgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT
species | Glycine max |
transcript | GLYMA14G06170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|18848488|gb|BM567686.1|BM567686
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: GTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|15337125|gb|BI497781.1|BI497781
genomic: GTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|6227935|gb|AW156597.1|AW156597
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|192299652|gb|FG987755.1|FG987755
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|298166678|gb|HO010117.1|HO010117
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|16996475|gb|BM085847.1|BM085847
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: ATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|192312625|gb|FK004313.1|FK004313
genomic: ATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|14125494|gb|BG789932.1|BG789932
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|209707198|gb|BW656816.1|BW656816
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|151412561|gb|EV282373.1|EV282373
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAGGGCTCAATGCTCCTAAGCATTGGEST: gi|209718729|gb|BW671930.1|BW671930
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|151396582|gb|EV266459.1|EV266459
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|298186841|gb|HO033940.1|HO033940
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|7639605|gb|AW733924.1|AW733924
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: TTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|193519200|gb|FK474965.1|FK474965
genomic: TTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: GCCGGGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|14999877|gb|BI320691.1|BI320691
genomic: GCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CACTAGTTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|15201271|gb|BI424783.1|BI424783
genomic: CACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: GAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|207806319|gb|GD778796.1|GD778796
genomic: GAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|209705389|gb|BW668019.1|BW668019
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|17023171|gb|BM094205.1|BM094205
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: GAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|213614487|gb|DB972811.1|DB972811
genomic: GAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|6566530|gb|AW234173.1|AW234173
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: GCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|9204413|gb|BE330637.1|BE330637
genomic: GCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: GGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|213620181|gb|DB967496.1|DB967496
genomic: GGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|38192546|gb|CF921752.1|CF921752
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|13791604|gb|BG654195.1|BG654195
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|209703748|gb|BW665021.1|BW665021
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: AAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|209719323|gb|BW665933.1|BW665933
genomic: AAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|192301197|gb|FG988032.1|FG988032
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|254319356|gb|GR828976.1|GR828976
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|15815361|gb|BI787636.1|BI787636
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: GCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|4314036|gb|AI461155.1|AI461155
genomic: GCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|192312626|gb|FK004314.1|FK004314
genomic: CGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|17023146|gb|BM094180.1|BM094180
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|151398495|gb|EV268366.1|EV268366
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: AGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTG-AAAGGCTCAATGCTCCTAAGCATTGGEST: gi|20813097|gb|BQ297567.1|BQ297567
genomic: AGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: GCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|11688388|gb|BF596064.1|BF596064
genomic: GCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: GGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|7042527|gb|AW472421.1|AW472421
genomic: GGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: AGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|213606507|gb|DB958989.1|DB958989
genomic: AGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|9205016|gb|BE331240.1|BE331240
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: GAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGEST: gi|192328145|gb|FK022854.1|FK022854
genomic: GAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG GCTAGGGGACTAAAGAAGTATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
gattttttttattttgtgcttgagctttaaacttttgtgcttatgattgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT
tttttattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactagcgttttgtatatgatttgttctttagacttgctgtttagattttttttattttgtgcttgagctttaaacttttgtgcttatgattgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT
- - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgag