1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtggtttgggttaggggtttccttaacaaatactcttctagtttctaagtggccaatgttgtttgagtgttaatacctttgaattttctgtttgtgcagACCGTCCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGCCTCCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTTG
species | Glycine max |
transcript | GLYMA14G05570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATCACGCTCGGAGCTTCTGAAGACTCAGGGGATTTCTCGTATCCTCAAT ACCGTCCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGCEST: gi|17022065|gb|BM093099.1|BM093099
genomic: CATCACGCTCGGAGCTTCTGAAGACTCAGGGGATTTCTCGTATCCTCAATgtaagagggt ... gtttgtgcagACCGTCCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGC
EST: CATCACGCTCGGAGCTTCTGAAGACTCAGGGGATTTCTCGTATCCTCAAT ACCGTCCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGCEST: gi|15662540|gb|BI699911.1|BI699911
genomic: CATCACGCTCGGAGCTTCTGAAGACTCAGGGGATTTCTCGTATCCTCAATgtaagagggt ... gtttgtgcagACCGTCCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGC
EST: CATCACGCTCGGAGCTTCTGAAGACTCAGGGGATTTCTCGTATCCTCAAT ACCGTCCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGCEST: gi|9902771|gb|BE611739.1|BE611739
genomic: CATCACGCTCGGAGCTTCTGAAGACTCAGGGGATTTCTCGTATCCTCAATgtaagagggt ... gtttgtgcagACCGTCCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGC
EST: CATCACGCTCGGAGCTTCTGAAGACTCAGGGGATTTCTCGTATCCTCAAT ACCGTCCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGC
genomic: CATCACGCTCGGAGCTTCTGAAGACTCAGGGGATTTCTCGTATCCTCAATgtaagagggt ... gtttgtgcagACCGTCCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGC
ctaagtggccaatgttgtttgagtgttaatacctttgaattttctgtttgtgcagACCGTCCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGCCTCCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTTG
tgttaat putative branch site (score: 3)
ttttctgttt putative PPT
tttgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtggtttgggttaggggtttccttaacaaatactcttctagtttctaagtggccaatgttgtttgagtgttaatacctttgaattttctgtttgtgcagACCGTCCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGCCTCCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- -ggtttgg
- - - - - - - ggggttt
- - - - - - - - - - -ccttaac
- - - - - - - - - - - - - - - - - -cttctag
- - - - - - - - - - - - - - - - - - - - - - -ctaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acctttg