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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctgacttaaatttcatagtttttagtgtgagattcgagcatgatttttatcttcgaaatgcagcttattgttatacggtttctgtaccacatttgtagCTACTGAAGAAGACTTCTGCGCGTCAAATATCAAAAACCGCTTCACCTGTGGAACATTTCCGGCAGGCATTGCAAAAG

Basic information

species Glycine max
transcript GLYMA14G05430.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 1
tgctgacttaaatttcatagtttttagtg--tgagattcgagcat---gatttttatcttcgaaatgcagcttattgttatacggtttct--gtaccacatttgtagCTACTGAAGAAGACTTCTGCGCGTCAAATATCAAAAACCGCTTCACCTGTGGAACATTTCCGGCAGGCATTGCAAAAG
        ||||||| ||| | ||   |      ||||      |   | | |||  |||  ||||||||||||||||||||||||||||  |||||||||||||||||| ||||||| |||||||| |  ||||||||||||||||| || ||||||||||| || |  ||  ||||  || ||
-------gtaaatttgataatattatctaaacatgatttatatctcgaggtgttttacttgaaaatgcagcttattgttatacggtttctctgtaccacatttgtagCTATTGAAGAAAACTTCTGCTCAGCAAATATCAAAAACCGCATCTCCTGTGGAACAATTTCATCATTCATTAGAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttatcttcgaaatgcagcttattgttatacggtttctgtaccacatttgtagCTACTGAAGAAGACTTCTGCGCGTCAAATATCAAAAACCGCTTCACCTGTGGAACATTTCCGGCAGGCATTGCAAAAG
                     ttattgttata  TA-rich tract