Sequence
atgc intronic sequence ATGC exonic sequence...ttatgattacctagctagctacacaagcttcatgattaactcatgtttgtaaaacagcatacacacatatatatacctttccttttcttttctttttcagGGTTTCAAGAAGGTAGCTGCTGATAGATGGGAGTTTGCAAATGAATACTTCAGAAAAGGAGCTAAGCACCTTTTATGTGAAATCCACAGGAGGAAAACCC
Basic information
species | Glycine max |
transcript | GLYMA14G04070.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G04070.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0009g02730.t01 (Vitis vinifera), 3'ss of exon 1
--ttatgattacctagctagctacacaagcttcatgattaact-catgtttgtaaaacagcatacacacatatatatacctttccttttcttttctttttcagGGTTTCAAGAAGGTAGCTGCTGATAGATGGGAGTTTGCAAATGAATACTTCAGAAAAGGAGCTAAGCACCTTTTATGTGAAATCCACAGGAGGAAAACCC
| || | | || | || || | | ||||| || | | || | | | | | | | | | | | | || | ||| ||||||||||||||| ||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||| | || | |||||||||||| || |||||||
tcatgtggtctaatgaatattttcattaggatagtatataactatatatctatagtataaga---atgtttttcttaatttatttctcccattacatttccagGGTTTCAAGAAGATAGTTGCAGATAGATGGGAGTTTGCAAATGAGTACTTCAGAAAAGGAGGGAAGCACATGTTGTCTGAAATCCACAGAAGAAAAACCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgtaaaacagcatacacacatatatatacctttccttttcttttctttttcagGGTTTCAAGAAGGTAGCTGCTGATAGATGGGAGTTTGCAAATGAATACTTCAGAAAAGGAGCTAAGCACCTTTTATGTGAAATCCACAGGAGGAAAACCC
tatatatacctttcct CT-rich tract
ttttcttttcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatgattacctagctagctacacaagcttcatgattaactcatgtttgtaaaacagcatacacacatatatatacctttccttttcttttctttttcagGGTTTCAAGAAGGTAGCTGCTGATAGATGGGAGTTTGCAAATGAATACTTCAGAAAAGGAGCTAAGCACCTTTTATGTGAAATCCACAGGAGGAAAACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - ctacaca
- - - - - - - - - - - - - - ttcatga
- - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaca