Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtaatgttaatggtttttgtgtttgatttagtttgcagagtgagtttgtggaatttaacatgtgaatgtgattatggttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTG

Basic information

species Glycine max
transcript GLYMA14G03380.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03380.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv19s0135g00100.t01 (Vitis vinifera), 3'ss of exon 1
--------------------gtgggtaat--gttaatggtttttgtgtttgatttagtttgcagagtgagtttgtggaatttaacatgtgaatgtgattatggttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTG
                     | || ||      || ||  |  |||||| ||||| ||       ||| | | | || | | | ||| |   ||        | |  |||||||||||||||||||||||| || ||||| |||||| | ||||| ||||||||||| | ||||||| | ||||| || ||||| || |||||||| ||||
tttttcttttcctgaattttctcggcaaccaaacaaaggaataggtgttttatttaattcc-----tgaatctattgattctgaaatgggttcgtt-------tgggcgcagTTTCACCAGTACCAGGTGGTAGGGAGGGCCCTTCCTTCGGAATCGGATGAGCATCCGAGGATCTACAGGATGAAGCTTTGGGCTACGAACGAGGTTCGTG

upper sequence: GLYMA14G03380.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0003g03150.t01 (Vitis vinifera), 3'ss of exon 1
--gtgggtaa-tgttaatggtttttgtgtttgatttagtttgcagag-tgagtttgtggaatttaacatgtgaa---tgtgattatggttgaa---gcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTG
   |   ||  | ||  |  ||||| |||   |   | |     ||| || |  | | |   | | |   ||     | |  || || ||| |   ||||||||||||||||||||| ||||| || ||||| ||  | ||  ||||||||||||| ||||||||||||||||| ||||||||||| || ||||| || |
ttttcattacctcttcctcatttttctgtcataacaaatggagggaggtgggggtttaggcctgatctaatggggtttatttttttgtttggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCG

upper sequence: GLYMA14G03380.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0003g03130.t01 (Vitis vinifera), 3'ss of exon 1
----------------gtgggtaatgttaatggtttttgtgtttgatttagtttgcagagtgagtttgtggaatttaacatgtgaatgtgattatggttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTG
                 |  |  |||  | ||| |||| |  ||  |||  ||||     |||  |  |  |||      |||   | || ||  |  |   ||||||||||||||||||||| ||||| || ||||| ||  | ||   |||||||||||| ||||||||||||||||| |||||||| || || ||||| || |
atttttctgtcccaacatatg-gatggaagtgggtttttt--ttatttttttttgggttttgacctgatctaatggggtttgttcgtttgtttgggtgt---gcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCG

upper sequence: GLYMA14G03380.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S101_218V6.1 (Physcomitrella patens), 3'ss of exon 1
-------gtgggtaatgttaatggtttttgtgtttgatttagtttgcagagtgagtttgtggaatttaacatgtgaatgtgattatg-----gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTG
       |  ||||  |  | |||   |||  ||   |  | ||    |  |   | || |     | || | ||| |||| || ||     | |  | ||||||||||||||||||||||||||  |||| || || || |   || ||||   ||| |||  ||||||||||||| | ||||| || ||||| || || |
gcgtcgagccggtag-gaaagtggagattgaattgtctccatttaaaggcttctatctgcgtgtgattac-tctgattgtgtttgtgcgcttggtacaacagTTTCACCAGTACCAGGTGGTGGGGCGGGCCCTCCCAACAGCTACCAATGAAACTCCCAAGGCCTACCGCATGAAATTATGGGCGACGAACGAAGTGCGCG

upper sequence: GLYMA14G03380.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 1
gtgggtaatgttaatggtttttgtgtttgatttagtttgcagagtgagtttgtggaatttaacatg-------tgaatgtgattatg---gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTG
    |||  | || |   |  ||   ||||  | |  |||    |   | |  ||   |||   ||       ||  |  |||||||   || |   ||||||||||||||||||||||||||  |||| || || || |   || |||||   || |||   |||||||||||  | ||||| || || || || || |
agttgtaggggtattatgtcgtgcacttgaagtgggatgcgtgttatctctacggctgttattgtggttttgatggctacgattatgcttgtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAGACCCCCAAGGCATACCGCATGAAGTTGTGGGCGACGAATGAAGTGCGCG

upper sequence: GLYMA14G03380.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S74_193V6.2 (Physcomitrella patens), 3'ss of exon 1
-gtgggtaat-gttaatggtttttgt-gtttgatttagtttgcag-agtgagtttgtggaatttaaca--tgtgaatgt---gattatggttga-agcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTG
 |||  | || |||    ||    || || |||   |   ||| | |    ||||     ||||  |   | |||  |     |||    |||  | |||||||| || ||||||||||| ||  |||| ||||||||||   || |||||   ||||||   ||||||||||| ||||||||||||||||| || || |
tgtgtatgattgtttgatgtcaccgtagtatgacccatcatgcggtaacttgttttcatcattttccggttctgatcgctccaatttcttttggtatcagTTTCATCAATACCAGGTGGTTGGGCGGGCCCTTCCTACCGCGACCAATGAGACACCTAAGGCTTACCGCATGAAGCTCTGGGCCACCAACGAAGTGCGCG

upper sequence: GLYMA14G03380.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ31458 (Selaginella moellendorffii), 3'ss of exon 1
gtgggtaatgttaatggtttttgtgtttgatttagtttgcagagtgagtttgtggaatttaacatgtgaatgtgattatggttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTG
                            |    | || ||||   |||   |    ||  | |   |||        || ||    |||||||||||||||||||||||| ||||| |||  ||| ||      | ||||||| || ||||| ||||| ||||| |||||||||  | |||| || || |
----------------------------gtaagaattcgcagctcgag--cgctcgatccatcgattgatccctcccattgtctc-gcagTTTCACCAGTACCAGGTGGTCGGAAGAGCTACTCCCACTCCCGACAATGAGCACCCAAAGATGTACCGGATGAAGCTCTGGGCCGGCGACGAAGTGCGCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180231|gb|HO025446.1|HO025446
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298178388|gb|HO024123.1|HO024123
EST:     AATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298176066|gb|HO015471.1|HO015471
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|18690771|gb|BM519619.1|BM519619
EST:     AAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298186560|gb|HO037193.1|HO037193
EST:     ACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATAAG
genomic: ACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|193499837|gb|FK464754.1|FK464754
EST:     CGGCGGGGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: CGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|193334219|gb|FK299213.1|FK299213
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298173141|gb|HO020125.1|HO020125
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|14259659|gb|BG882567.1|BG882567
EST:     CAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: CAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298186019|gb|HO031180.1|HO031180
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298176384|gb|HO023085.1|HO023085
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298178730|gb|HO024465.1|HO024465
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298193450|gb|HO033884.1|HO033884
EST:     CGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCACTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: CGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298185614|gb|HO030827.1|HO030827
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|192319176|gb|FK009116.1|FK009116
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|14259368|gb|BG882276.1|BG882276
EST:     GTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: GTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|193442335|gb|FK407334.1|FK407334
EST:     CGGCGGGGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: CGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|19053812|gb|BM732479.1|BM732479
EST:     CGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: CGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298190320|gb|HO032441.1|HO032441
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298174887|gb|HO014804.1|HO014804
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|208182844|gb|GD986946.1|GD986946
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|193482719|gb|FK444010.1|FK444010
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|151404556|gb|EV274370.1|EV274370
EST:     GGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: GGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298190823|gb|HO032944.1|HO032944
EST:     AACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|213606515|gb|DB958997.1|DB958997
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298167185|gb|HO010624.1|HO010624
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298179498|gb|HO027969.1|HO027969
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|208040782|gb|GD839887.1|GD839887
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|193649046|gb|FK597513.1|FK597513
EST:     GCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: GCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|213606584|gb|DB972519.1|DB972519
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|16343137|gb|BI968732.1|BI968732
EST:     GGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: GGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|193700425|gb|FK635054.1|FK635054
EST:     GATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: GATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|213593001|gb|DB969855.1|DB969855
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298184153|gb|HO029366.1|HO029366
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|193664142|gb|FK608750.1|FK608750
EST:     CGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: CGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|208185248|gb|GD981608.1|GD981608
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298179381|gb|HO027852.1|HO027852
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298166773|gb|HO010212.1|HO010212
EST:     AACAGCAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|20815207|gb|BQ299685.1|BQ299685
EST:     CGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: CGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|151407956|gb|EV277771.1|EV277771
EST:     GGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: GGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298194938|gb|HO043410.1|HO043410
EST:     GCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: GCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|192311868|gb|FK004513.1|FK004513
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|192311867|gb|FK004512.1|FK004512
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298191318|gb|HO038797.1|HO038797
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298180711|gb|HO022150.1|HO022150
EST:     GCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: GCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|193619369|gb|FK571237.1|FK571237
EST:     GATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: GATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298199015|gb|HO042378.1|HO042378
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298183906|gb|HO029119.1|HO029119
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|207758863|gb|GD732186.1|GD732186
EST:     AACTAGTTTGTCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AAC-AG-TTG-CGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|207786059|gb|GD756184.1|GD756184
EST:     GGCGGGGATGGTTGCCATGAGG                         T
genomic: GGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcag-
EST: gi|207786059|gb|GD756184.1|GD756184
EST:     GGCGGGGATGGTTGCCATGAGG                         T
genomic: GGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcag-
EST: gi|19053708|gb|BM732375.1|BM732375
EST:     GTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: GTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298188212|gb|HO034905.1|HO034905
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGGAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|12691345|gb|BG157681.1|BG157681
EST:     GTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAAGGGACTCTTCCTACCGAATCCGATG
genomic: GTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGG-AAGGG-CTCTTCCTACCGAATCCGATG
EST: gi|298165598|gb|HO011647.1|HO011647
EST:     AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGG                         TTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: AACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGgtgggtaatg ... gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcagagtgagtttgtggaatttaacatgtgaatgtgattatggttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTG
                     atttaac  putative branch site (score: 3)
                    aatttaacat  TA-rich tract