1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgtaaactacagattaagtcgtcaccgtgtacgtgttttggtaaaattagcatgtactttatcacatttgtatgtttctatttgttgtattgttttgcagTGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG
species | Glycine max |
transcript | GLYMA14G03100.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTATGCCAACAACAG TGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAAEST: gi|193304745|gb|FK272230.1|FK272230
genomic: AGTATGCCAACAACAGgttcaaatat ... tgttttgcagTGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAA
EST: CTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAG TGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAAEST: gi|193640837|gb|FK588588.1|FK588588
genomic: CTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAGgttcaaatat ... tgttttgcagTGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAA
EST: CTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAG TGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGEST: gi|208097046|gb|GD894699.1|GD894699
genomic: CTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAGgttcaaatat ... tgttttgcagTGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTG
EST: CTTGTCGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAG TGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAAEST: gi|208309977|gb|GE109747.1|GE109747
genomic: CTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAGgttcaaatat ... tgttttgcagTGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAA
EST: CTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAG TGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAAEST: gi|193521334|gb|FK480375.1|FK480375
genomic: CTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAGgttcaaatat ... tgttttgcagTGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAA
EST: ACGCCTCTATGAGTATGCCAACAACAG TGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAA
genomic: ACGCCTCTATGAGTATGCCAACAACAGgttcaaatat ... tgttttgcagTGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAA
attagcatgtactttatcacatttgtatgtttctatttgttgtattgttttgcagTGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG
ttgtttt CT-rich tract
tttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaaactacagattaagtcgtcaccgtgtacgtgttttggtaaaattagcatgtactttatcacatttgtatgtttctatttgttgtattgttttgcagTGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC